Mercurial > repos > jjohnson > mothur_toolsuite
annotate mothur/tool-data/mothur_aligndb.loc.sample @ 34:1be61ceb20d7
Updated tool_dependencies.xml to build mothur package on Linux (may break other OSes).
| author | pjbriggs |
|---|---|
| date | Mon, 22 Sep 2014 11:19:09 -0400 |
| parents | 09740be2bc9c |
| children |
| rev | line source |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
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parents:
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1 #This is a sample file distributed with Galaxy that enables tools |
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a6189f58fedb
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Jim Johnson <jj@umn.edu>
parents:
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2 #to use a directory of metagenomics files. |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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3 #file has this format (white space characters are TAB characters): |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
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4 # |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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5 # Reference Alignments: http://www.mothur.org/wiki/Alignment_database |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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6 # |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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7 #<dbname> <file_base> |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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8 # |
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9 #greengenes /project/db/galaxy/mothur/core_set_aligned.imputed.fasta |
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09740be2bc9c
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parents:
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10 #silva archaea /project/db/galaxy/mothur/Silva.archaea/silva.archaea.fasta |
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09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
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11 #silva bacteria /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.fasta |
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09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
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12 #silva eukarya /project/db/galaxy/mothur/silva.eukarya.fasta |
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09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
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13 #silva archaea nogap /project/db/galaxy/mothur/Silva.archaea/nogap.archaea.fasta |
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09740be2bc9c
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Jim Johnson <jj@umn.edu>
parents:
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14 #silva bacteria nogap /project/db/galaxy/mothur/silva.bacteria/nogap.bacteria.fasta |
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09740be2bc9c
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Jim Johnson <jj@umn.edu>
parents:
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15 #silva eukarya nogap /project/db/galaxy/mothur/nogap.eukarya.fasta |
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parents:
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16 #FungiLSU_train_1400bp_8506_mod.fasta /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.fasta |
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09740be2bc9c
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Jim Johnson <jj@umn.edu>
parents:
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17 #trainset6_032010.rdp.fasta /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.fasta |
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09740be2bc9c
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Jim Johnson <jj@umn.edu>
parents:
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18 #trainset7_112011.pds.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.pds.fasta |
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09740be2bc9c
Mothur - updates for Mothur version 1.24
Jim Johnson <jj@umn.edu>
parents:
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19 #trainset7_112011.rdp.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.fasta |