Mercurial > repos > jjohnson > mothur_toolsuite
annotate mothur/tool-data/datatypes.conf.xml @ 26:5c77423823cb
Updates for Mothur version 1.25.0 (includes changes to datatypes metagenomics.py and uses more efficient means for labels and groups options)
author | Jim Johnson <jj@umn.edu> |
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date | Wed, 16 May 2012 13:12:05 -0500 |
parents | 57df76d861e4 |
children | 49058b1f8d3f |
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1 <?xml version="1.0"?> |
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2 <datatypes> |
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3 <datatype_files> |
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4 <datatype_file name="metagenomics.py"/> |
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5 </datatype_files> |
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6 <registration> |
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7 <datatype extension="otu" type="galaxy.datatypes.metagenomics:Otu" display_in_upload="true"/> |
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8 <datatype extension="list" type="galaxy.datatypes.metagenomics:OtuList" display_in_upload="true"/> |
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9 <datatype extension="sabund" type="galaxy.datatypes.metagenomics:Sabund" display_in_upload="true"/> |
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10 <datatype extension="rabund" type="galaxy.datatypes.metagenomics:Rabund" display_in_upload="true"/> |
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11 <datatype extension="shared" type="galaxy.datatypes.metagenomics:SharedRabund" display_in_upload="true"/> |
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12 <datatype extension="relabund" type="galaxy.datatypes.metagenomics:RelAbund" display_in_upload="true"/> |
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13 <datatype extension="names" type="galaxy.datatypes.metagenomics:Names" display_in_upload="true"/> |
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14 <datatype extension="design" type="galaxy.datatypes.metagenomics:Design" display_in_upload="true"/> |
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15 <datatype extension="summary" type="galaxy.datatypes.metagenomics:Summary" display_in_upload="true"/> |
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16 <datatype extension="groups" type="galaxy.datatypes.metagenomics:Group" display_in_upload="true"/> |
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17 <datatype extension="oligos" type="galaxy.datatypes.metagenomics:Oligos" display_in_upload="true"/> |
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18 <datatype extension="align" type="galaxy.datatypes.metagenomics:SequenceAlignment" display_in_upload="true"/> |
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19 <datatype extension="accnos" type="galaxy.datatypes.metagenomics:AccNos" display_in_upload="true"/> |
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20 <datatype extension="map" type="galaxy.datatypes.metagenomics:SecondaryStructureMap" display_in_upload="true"/> |
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21 <datatype extension="align.check" type="galaxy.datatypes.metagenomics:AlignCheck" display_in_upload="true"/> |
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22 <datatype extension="align.report" type="galaxy.datatypes.metagenomics:AlignReport" display_in_upload="true"/> |
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23 <datatype extension="filter" type="galaxy.datatypes.metagenomics:LaneMask" display_in_upload="true"/> |
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24 <datatype extension="dist" type="galaxy.datatypes.metagenomics:DistanceMatrix" display_in_upload="true"/> |
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25 <datatype extension="pair.dist" type="galaxy.datatypes.metagenomics:PairwiseDistanceMatrix" display_in_upload="true"/> |
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26 <datatype extension="square.dist" type="galaxy.datatypes.metagenomics:SquareDistanceMatrix" display_in_upload="true"/> |
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27 <datatype extension="lower.dist" type="galaxy.datatypes.metagenomics:LowerTriangleDistanceMatrix" display_in_upload="true"/> |
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28 <datatype extension="ref.taxonomy" type="galaxy.datatypes.metagenomics:RefTaxonomy" display_in_upload="true"> |
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29 <converter file="ref_to_seq_taxonomy_converter.xml" target_datatype="seq.taxonomy"/> |
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30 </datatype> |
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31 <datatype extension="seq.taxonomy" type="galaxy.datatypes.metagenomics:SequenceTaxonomy" display_in_upload="true"/> |
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32 <datatype extension="rdp.taxonomy" type="galaxy.datatypes.metagenomics:RDPSequenceTaxonomy" display_in_upload="true"/> |
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33 <datatype extension="cons.taxonomy" type="galaxy.datatypes.metagenomics:ConsensusTaxonomy" display_in_upload="true"/> |
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34 <datatype extension="tax.summary" type="galaxy.datatypes.metagenomics:TaxonomySummary" display_in_upload="true"/> |
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35 <datatype extension="freq" type="galaxy.datatypes.metagenomics:Frequency" display_in_upload="true"/> |
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36 <datatype extension="quan" type="galaxy.datatypes.metagenomics:Quantile" display_in_upload="true"/> |
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37 <datatype extension="filtered.quan" type="galaxy.datatypes.metagenomics:FilteredQuantile" display_in_upload="true"/> |
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38 <datatype extension="masked.quan" type="galaxy.datatypes.metagenomics:MaskedQuantile" display_in_upload="true"/> |
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39 <datatype extension="filtered.masked.quan" type="galaxy.datatypes.metagenomics:FilteredMaskedQuantile" display_in_upload="true"/> |
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40 <datatype extension="axes" type="galaxy.datatypes.metagenomics:Axes" display_in_upload="true"/> |
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41 <datatype extension="sff.flow" type="galaxy.datatypes.metagenomics:SffFlow" display_in_upload="true"/> |
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42 <datatype extension="tre" type="galaxy.datatypes.metagenomics:Newick" display_in_upload="true"/> |
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5c77423823cb
Updates for Mothur version 1.25.0 (includes changes to datatypes metagenomics.py and uses more efficient means for labels and groups options)
Jim Johnson <jj@umn.edu>
parents:
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43 <datatype extension="biom" type="galaxy.datatypes.metagenomics:BiologicalObservationMatrix" display_in_upload="true"/> |
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44 <datatype extension="nhx" type="galaxy.datatypes.metagenomics:Nhx" display_in_upload="true"/> |
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45 <datatype extension="nex" type="galaxy.datatypes.metagenomics:Nexus" display_in_upload="true"/> |
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46 </registration> |
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47 </datatypes> |