Mercurial > repos > jjohnson > mothur_toolsuite

annotate mothur/tools/suite_config.xml @ 6:ce6e81622c6a

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Allow for output file ext to be either .chimera or .chimeras
author Jim Johnson <jj@umn.edu>
date Mon, 27 Jun 2011 09:34:14 -0500
parents fcc0778f6987
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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1 <tool id="mothur_align_check" name="Align.check" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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2 <description>Calculate the number of potentially misaligned bases</description>
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3 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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4 <tool id="mothur_align_seqs" name="Align.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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5 <description>Align sequences to a template alignment</description>
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6 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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7 <tool id="mothur_bin_seqs" name="Bin.seqs" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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8 <description>Order Sequences by OTU</description>
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9 </tool>
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10 <tool id="mothur_bootstrap_shared" name="Bootstrap.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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11 <description>Generate a newick trees for dissimilarity among groups</description>
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12 </tool>
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13 <tool id="mothur_chimera_bellerophon" name="Chimera.bellerophon" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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14 <description>Find putative chimeras using bellerophon</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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15 </tool>
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16 <tool id="mothur_chimera_ccode" name="Chimera.ccode" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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17 <description>Find putative chimeras using ccode</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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18 </tool>
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19 <tool id="mothur_chimera_check" name="Chimera.check" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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20 <description>Find putative chimeras using chimeraCheck</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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21 </tool>
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22 <tool id="mothur_chimera_pintail" name="Chimera.pintail" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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23 <description>Find putative chimeras using pintail</description>
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24 </tool>
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25 <tool id="mothur_chimera_slayer" name="Chimera.slayer" version="1.16.0">
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26 <description>Find putative chimeras using slayer</description>
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27 </tool>
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28 <tool id="mothur_chop_seqs" name="Chop.seqs" version="1.16.0">
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29 <description>Trim sequences to a specified length</description>
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30 </tool>
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31 <tool id="mothur_classify_otu" name="Classify.otu" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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32 <description>Assign sequences to taxonomy</description>
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33 </tool>
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34 <tool id="mothur_classify_seqs" name="Classify.seqs" version="1.16.0">
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35 <description>Assign sequences to taxonomy</description>
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36 </tool>
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37 <tool id="mothur_clearcut" name="Clearcut" version="1.16.0">
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38 <description>Generate a tree using relaxed neighbor joining</description>
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39 </tool>
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40 <tool id="mothur_cluster_classic" name="Cluster.classic" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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41 <description>Assign sequences to OTUs (Dotur implementation)</description>
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42 </tool>
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43 <tool id="mothur_cluster_fragments" name="Cluster.fragments" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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44 <description> Group sequences that are part of a larger sequence</description>
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45 </tool>
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46 <tool id="mothur_cluster_split" name="Cluster.split" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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47 <description>Assign sequences to OTUs (Operational Taxonomic Unit) splits large matrices</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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48 </tool>
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49 <tool id="mothur_cluster" name="Cluster" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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50 <description>Assign sequences to OTUs (Operational Taxonomic Unit)</description>
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51 </tool>
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52 <tool id="mothur_collect_shared" name="Collect.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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53 <description>Generate collector's curves for calculators on OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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54 </tool>
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55 <tool id="mothur_collect_single" name="Collect.single" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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56 <description>Summary of calculator values for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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57 </tool>
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58 <tool id="mothur_consensus_seqs" name="Consensus.seqs" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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59 <description>Find a consensus sequence for each OTU or phylotype</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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60 </tool>
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61 <tool id="mothur_corr_axes" name="Corr.axes" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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62 <description>correlation of data to axes</description>
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63 </tool>
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64 <tool id="mothur_degap_seqs" name="Degap.seqs" version="1.16.0">
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65 <description>Remove gap characters from sequences</description>
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66 </tool>
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67 <tool id="mothur_deunique_seqs" name="Deunique.seqs" version="1.16.0">
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68 <description>Return all sequences</description>
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69 </tool>
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70 <tool id="mothur_dist_seqs" name="Dist.seqs" version="1.16.0">
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71 <description>calculate uncorrected pairwise distances between aligned sequences</description>
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72 </tool>
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73 <tool id="mothur_dist_shared" name="Dist.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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74 <description>Generate a phylip-formatted dissimilarity distance matrix among multiple groups</description>
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75 </tool>
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76 <tool id="mothur_fastq_info" name="Fastq.info" version="1.16.0">
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77 <description>Convert fastq to fasta and quality</description>
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78 </tool>
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79 <tool id="mothur_filter_seqs" name="Filter.seqs" version="1.16.0" force_history_refresh="True">
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80 <description>removes columns from alignments</description>
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81 </tool>
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82 <tool id="mothur_get_groups" name="Get.groups" version="1.16.0">
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83 <description>Select groups</description>
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84 </tool>
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85 <tool id="mothur_get_group" name="Get.group" version="1.16.0">
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86 <description>group names from shared or from list and group</description>
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87 </tool>
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88 <tool id="mothur_get_lineage" name="Get.lineage" version="1.16.0">
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89 <description>Picks by taxon</description>
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90 </tool>
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91 <tool id="mothur_get_oturep" name="Get.oturep" version="1.16.0" force_history_refresh="True">
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92 <description>Generate a fasta with a representative sequence for each OTU</description>
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93 </tool>
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94 <tool id="mothur_get_otus" name="Get.otus" version="1.16.0">
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95 <description>Get otus containing sequences from specified groups</description>
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96 </tool>
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97 <tool id="mothur_get_relabund" name="Get.relabund" version="1.16.0">
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98 <description>Calculate the relative abundance of each otu</description>
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99 </tool>
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100 <tool id="mothur_get_seqs" name="Get.seqs" version="1.16.0">
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101 <description>Picks sequences by name</description>
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102 </tool>
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103 <tool id="mothur_hcluster" name="Hcluster" version="1.16.0">
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104 <description>Assign sequences to OTUs (Operational Taxonomic Unit)</description>
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105 </tool>
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106 <tool id="mothur_heatmap_bin" name="Heatmap.bin" version="1.16.0" force_history_refresh="True">
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107 <description>Generate a heatmap for OTUs</description>
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108 </tool>
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109 <tool id="mothur_heatmap_sim" name="Heatmap.sim" version="1.16.0" force_history_refresh="True">
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110 <description>Generate a heatmap for pariwise similarity</description>
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111 </tool>
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112 <tool id="mothur_indicator" name="Indicator" version="1.16.0">
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113 <description>Identify indicator "species" for nodes on a tree</description>
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114 </tool>
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115 <tool id="mothur_libshuff" name="Libshuff" version="1.16.0">
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116 <description>Cramer-von Mises tests communities for the same structure</description>
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117 </tool>
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118 <tool id="mothur_list_seqs" name="List.seqs" version="1.16.0">
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119 <description>Lists the names of the sequences</description>
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120 </tool>
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121 <tool id="mothur_make_design" name="Make Design" version="1.16.0" >
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122 <description>Assign groups to Sets</description>
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123 </tool>
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124 <tool id="mothur_make_files" name="Make.group" version="1.16.0">
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125 <description>Make a group file</description>
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126 </tool>
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127 <tool id="mothur_merge_files" name="Merge.files" version="1.16.0">
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128 <description>Merge data</description>
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129 </tool>
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130 <tool id="mothur_merge_groups" name="Merge.groups" version="1.16.0" >
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131 <description>Merge groups in a shared file</description>
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132 </tool>
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133 <tool id="mothur_metastats" name="Metastats" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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134 <description>generate principle components plot data</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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135 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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136 <tool id="mothur_nmds" name="Nmds" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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137 <description>generate non-metric multidimensional scaling data</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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138 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
139 <tool id="mothur_normalize_shared" name="Normalize.shared" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
140 <description>Normalize the number of sequences per group to a specified level</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
141 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
142 <tool id="mothur_pairwise_seqs" name="Pairwise.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
143 <description>calculate uncorrected pairwise distances between sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
144 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
145 <tool id="mothur_parse_list" name="Parse.list" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
146 <description>Order Sequences by OTU</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
147 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
148 <tool id="mothur_parsimony" name="Parsimony" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
149 <description>Describes whether two or more communities have the same structure</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
150 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
151 <tool id="mothur_pca" name="Pca" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
152 <description>generate principle components plot data</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
153 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
154 <tool id="mothur_pcoa" name="Pcoa" version="1.16.0" >
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
155 <description>Principal Coordinate Analysis</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
156 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
157 <tool id="mothur_phylo_diversity" name="Phylo.diversity" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
158 <description>Alpha Diversity calculate unique branch length</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
159 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
160 <tool id="mothur_phylotype" name="Phylotype" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
161 <description>Assign sequences to OTUs based on taxonomy</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
162 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
163 <tool id="mothur_pre_cluster" name="Pre.cluster" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
164 <description>Remove sequences due to pyrosequencing errors</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
165 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
166 <tool id="mothur_rarefaction_shared" name="Rarefaction.shared" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
167 <description>Generate inter-sample rarefaction curves for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
168 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
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169 <tool id="mothur_rarefaction_single" name="Rarefaction.single" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
170 <description>Generate intra-sample rarefaction curves for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
171 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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172 <tool id="mothur_read_otu" name="Read.otu" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
173 <description>Read OTU list and group to create a shared file</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
174 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
175 <tool id="mothur_remove_groups" name="Remove.groups" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
176 <description>Remove groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
177 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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178 <tool id="mothur_remove_lineage" name="Remove.lineage" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
179 <description>Picks by taxon</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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180 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
181 <tool id="mothur_remove_otus" name="Remove.otus" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
182 <description>Remove otus containing sequences from specified groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
183 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
184 <tool id="mothur_remove_rare" name="Remove.rare" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
185 <description>Remove rare OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
186 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
187 <tool id="mothur_remove_seqs" name="Remove.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
188 <description>Remove sequences by name</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
189 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
190 <tool id="mothur_reverse_seqs" name="Reverse.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
191 <description>Reverse complement the sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
192 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
193 <tool id="mothur_screen_seqs" name="Screen.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
194 <description>Screen sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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195 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
196 <tool id="mothur_sffinfo" name="Sffinfo" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
197 <description>Summarize the quality of sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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198 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
199 <tool id="mothur_split_abund" name="Split.abund" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
200 <description>Separate sequences into rare and abundant groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
201 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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202 <tool id="mothur_split_groups" name="Split.groups" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
203 <description>Generates a fasta file for each group</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
204 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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205 <tool id="mothur_sub_sample" name="Sub.sample" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
206 <description>Create a sub sample</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
207 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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208 <tool id="mothur_summary_seqs" name="Summary.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
209 <description>Summarize the quality of sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
210 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
211 <tool id="mothur_summary_shared" name="Summary.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
212 <description>Summary of calculator values for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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diff changeset
213 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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214 <tool id="mothur_summary_single" name="Summary.single" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
215 <description>Summary of calculator values for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
216 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
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217 <tool id="mothur_tree_shared" name="Tree.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
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218 <description>Generate a newick tree for dissimilarity among groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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219 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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220 <tool id="tree_vector" name="TreeVector" version="1.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
221 <description>Draw a Phylogenic Tree</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
222 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
223 <tool id="mothur_trim_seqs" name="Trim.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
224 <description>Trim sequences - primers, barcodes, quality</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
225 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
226 <tool id="mothur_unifrac_unweighted" name="unifrac.unweighted" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
227 <description>Describes whether two or more communities have the same structure</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
228 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
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229 <tool id="mothur_unifrac_weighted" name="unifrac.weighted" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
230 <description>Describes whether two or more communities have the same structure</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
diff changeset
231 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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parents:
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232 <tool id="mothur_unique_seqs" name="Unique.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
233 <description>Return unique sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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234 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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235 <tool id="mothur_venn" name="Venn" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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236 <description>Generate Venn diagrams gor groups </description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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237 </tool>