Mercurial > repos > jjohnson > mothur_toolsuite

annotate mothur/tools/suite_config.xml @ 2:e990ac8a0f58

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Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
author jjohnson
date Tue, 07 Jun 2011 17:39:06 -0400
parents fcc0778f6987
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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1 <tool id="mothur_align_check" name="Align.check" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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2 <description>Calculate the number of potentially misaligned bases</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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3 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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4 <tool id="mothur_align_seqs" name="Align.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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5 <description>Align sequences to a template alignment</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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6 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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7 <tool id="mothur_bin_seqs" name="Bin.seqs" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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8 <description>Order Sequences by OTU</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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9 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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10 <tool id="mothur_bootstrap_shared" name="Bootstrap.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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11 <description>Generate a newick trees for dissimilarity among groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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12 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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13 <tool id="mothur_chimera_bellerophon" name="Chimera.bellerophon" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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14 <description>Find putative chimeras using bellerophon</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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15 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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16 <tool id="mothur_chimera_ccode" name="Chimera.ccode" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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17 <description>Find putative chimeras using ccode</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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18 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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19 <tool id="mothur_chimera_check" name="Chimera.check" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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20 <description>Find putative chimeras using chimeraCheck</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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21 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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22 <tool id="mothur_chimera_pintail" name="Chimera.pintail" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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23 <description>Find putative chimeras using pintail</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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24 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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25 <tool id="mothur_chimera_slayer" name="Chimera.slayer" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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26 <description>Find putative chimeras using slayer</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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27 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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28 <tool id="mothur_chop_seqs" name="Chop.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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29 <description>Trim sequences to a specified length</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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30 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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31 <tool id="mothur_classify_otu" name="Classify.otu" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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32 <description>Assign sequences to taxonomy</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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33 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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34 <tool id="mothur_classify_seqs" name="Classify.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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35 <description>Assign sequences to taxonomy</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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36 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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37 <tool id="mothur_clearcut" name="Clearcut" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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38 <description>Generate a tree using relaxed neighbor joining</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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39 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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40 <tool id="mothur_cluster_classic" name="Cluster.classic" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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41 <description>Assign sequences to OTUs (Dotur implementation)</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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42 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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43 <tool id="mothur_cluster_fragments" name="Cluster.fragments" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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44 <description> Group sequences that are part of a larger sequence</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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45 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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46 <tool id="mothur_cluster_split" name="Cluster.split" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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47 <description>Assign sequences to OTUs (Operational Taxonomic Unit) splits large matrices</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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48 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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49 <tool id="mothur_cluster" name="Cluster" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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50 <description>Assign sequences to OTUs (Operational Taxonomic Unit)</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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51 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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52 <tool id="mothur_collect_shared" name="Collect.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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53 <description>Generate collector's curves for calculators on OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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54 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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55 <tool id="mothur_collect_single" name="Collect.single" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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56 <description>Summary of calculator values for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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57 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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58 <tool id="mothur_consensus_seqs" name="Consensus.seqs" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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59 <description>Find a consensus sequence for each OTU or phylotype</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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60 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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61 <tool id="mothur_corr_axes" name="Corr.axes" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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62 <description>correlation of data to axes</description>
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63 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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64 <tool id="mothur_degap_seqs" name="Degap.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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65 <description>Remove gap characters from sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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66 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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67 <tool id="mothur_deunique_seqs" name="Deunique.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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68 <description>Return all sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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69 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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70 <tool id="mothur_dist_seqs" name="Dist.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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71 <description>calculate uncorrected pairwise distances between aligned sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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72 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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73 <tool id="mothur_dist_shared" name="Dist.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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74 <description>Generate a phylip-formatted dissimilarity distance matrix among multiple groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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75 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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76 <tool id="mothur_fastq_info" name="Fastq.info" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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77 <description>Convert fastq to fasta and quality</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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78 </tool>
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79 <tool id="mothur_filter_seqs" name="Filter.seqs" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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80 <description>removes columns from alignments</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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81 </tool>
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82 <tool id="mothur_get_groups" name="Get.groups" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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83 <description>Select groups</description>
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84 </tool>
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85 <tool id="mothur_get_group" name="Get.group" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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86 <description>group names from shared or from list and group</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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87 </tool>
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88 <tool id="mothur_get_lineage" name="Get.lineage" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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89 <description>Picks by taxon</description>
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90 </tool>
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91 <tool id="mothur_get_oturep" name="Get.oturep" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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92 <description>Generate a fasta with a representative sequence for each OTU</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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93 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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94 <tool id="mothur_get_otus" name="Get.otus" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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95 <description>Get otus containing sequences from specified groups</description>
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96 </tool>
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97 <tool id="mothur_get_relabund" name="Get.relabund" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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98 <description>Calculate the relative abundance of each otu</description>
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99 </tool>
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100 <tool id="mothur_get_seqs" name="Get.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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101 <description>Picks sequences by name</description>
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102 </tool>
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103 <tool id="mothur_hcluster" name="Hcluster" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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104 <description>Assign sequences to OTUs (Operational Taxonomic Unit)</description>
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105 </tool>
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106 <tool id="mothur_heatmap_bin" name="Heatmap.bin" version="1.16.0" force_history_refresh="True">
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107 <description>Generate a heatmap for OTUs</description>
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108 </tool>
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109 <tool id="mothur_heatmap_sim" name="Heatmap.sim" version="1.16.0" force_history_refresh="True">
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110 <description>Generate a heatmap for pariwise similarity</description>
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111 </tool>
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112 <tool id="mothur_indicator" name="Indicator" version="1.16.0">
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113 <description>Identify indicator "species" for nodes on a tree</description>
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114 </tool>
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115 <tool id="mothur_libshuff" name="Libshuff" version="1.16.0">
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116 <description>Cramer-von Mises tests communities for the same structure</description>
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117 </tool>
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118 <tool id="mothur_list_seqs" name="List.seqs" version="1.16.0">
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119 <description>Lists the names of the sequences</description>
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120 </tool>
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121 <tool id="mothur_make_design" name="Make Design" version="1.16.0" >
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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122 <description>Assign groups to Sets</description>
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123 </tool>
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124 <tool id="mothur_make_files" name="Make.group" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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125 <description>Make a group file</description>
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126 </tool>
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127 <tool id="mothur_merge_files" name="Merge.files" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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128 <description>Merge data</description>
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129 </tool>
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130 <tool id="mothur_merge_groups" name="Merge.groups" version="1.16.0" >
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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131 <description>Merge groups in a shared file</description>
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132 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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133 <tool id="mothur_metastats" name="Metastats" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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134 <description>generate principle components plot data</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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135 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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136 <tool id="mothur_nmds" name="Nmds" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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137 <description>generate non-metric multidimensional scaling data</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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138 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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139 <tool id="mothur_normalize_shared" name="Normalize.shared" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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140 <description>Normalize the number of sequences per group to a specified level</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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141 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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142 <tool id="mothur_pairwise_seqs" name="Pairwise.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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143 <description>calculate uncorrected pairwise distances between sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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144 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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145 <tool id="mothur_parse_list" name="Parse.list" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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146 <description>Order Sequences by OTU</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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147 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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148 <tool id="mothur_parsimony" name="Parsimony" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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149 <description>Describes whether two or more communities have the same structure</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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150 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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151 <tool id="mothur_pca" name="Pca" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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152 <description>generate principle components plot data</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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153 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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154 <tool id="mothur_pcoa" name="Pcoa" version="1.16.0" >
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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155 <description>Principal Coordinate Analysis</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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156 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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157 <tool id="mothur_phylo_diversity" name="Phylo.diversity" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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158 <description>Alpha Diversity calculate unique branch length</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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159 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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160 <tool id="mothur_phylotype" name="Phylotype" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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161 <description>Assign sequences to OTUs based on taxonomy</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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162 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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163 <tool id="mothur_pre_cluster" name="Pre.cluster" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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164 <description>Remove sequences due to pyrosequencing errors</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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165 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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166 <tool id="mothur_rarefaction_shared" name="Rarefaction.shared" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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167 <description>Generate inter-sample rarefaction curves for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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168 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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169 <tool id="mothur_rarefaction_single" name="Rarefaction.single" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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170 <description>Generate intra-sample rarefaction curves for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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171 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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172 <tool id="mothur_read_otu" name="Read.otu" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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173 <description>Read OTU list and group to create a shared file</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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174 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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175 <tool id="mothur_remove_groups" name="Remove.groups" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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176 <description>Remove groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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177 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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178 <tool id="mothur_remove_lineage" name="Remove.lineage" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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179 <description>Picks by taxon</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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180 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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181 <tool id="mothur_remove_otus" name="Remove.otus" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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182 <description>Remove otus containing sequences from specified groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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183 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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184 <tool id="mothur_remove_rare" name="Remove.rare" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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185 <description>Remove rare OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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186 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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187 <tool id="mothur_remove_seqs" name="Remove.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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188 <description>Remove sequences by name</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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189 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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190 <tool id="mothur_reverse_seqs" name="Reverse.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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191 <description>Reverse complement the sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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192 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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193 <tool id="mothur_screen_seqs" name="Screen.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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194 <description>Screen sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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195 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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196 <tool id="mothur_sffinfo" name="Sffinfo" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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197 <description>Summarize the quality of sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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198 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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199 <tool id="mothur_split_abund" name="Split.abund" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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200 <description>Separate sequences into rare and abundant groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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201 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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202 <tool id="mothur_split_groups" name="Split.groups" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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203 <description>Generates a fasta file for each group</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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204 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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205 <tool id="mothur_sub_sample" name="Sub.sample" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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206 <description>Create a sub sample</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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207 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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208 <tool id="mothur_summary_seqs" name="Summary.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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209 <description>Summarize the quality of sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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210 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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211 <tool id="mothur_summary_shared" name="Summary.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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212 <description>Summary of calculator values for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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213 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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214 <tool id="mothur_summary_single" name="Summary.single" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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215 <description>Summary of calculator values for OTUs</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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216 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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217 <tool id="mothur_tree_shared" name="Tree.shared" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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218 <description>Generate a newick tree for dissimilarity among groups</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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219 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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220 <tool id="tree_vector" name="TreeVector" version="1.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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221 <description>Draw a Phylogenic Tree</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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222 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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223 <tool id="mothur_trim_seqs" name="Trim.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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224 <description>Trim sequences - primers, barcodes, quality</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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225 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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226 <tool id="mothur_unifrac_unweighted" name="unifrac.unweighted" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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227 <description>Describes whether two or more communities have the same structure</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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228 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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229 <tool id="mothur_unifrac_weighted" name="unifrac.weighted" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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230 <description>Describes whether two or more communities have the same structure</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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231 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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232 <tool id="mothur_unique_seqs" name="Unique.seqs" version="1.16.0">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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233 <description>Return unique sequences</description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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234 </tool>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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235 <tool id="mothur_venn" name="Venn" version="1.16.0" force_history_refresh="True">
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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236 <description>Generate Venn diagrams gor groups </description>
fcc0778f6987 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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237 </tool>