Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/datatypes_conf.xml @ 27:49058b1f8d3f
Update to mothur version 1.27 and add tool_dependencies.xml to automatically install mothur
author | Jim Johnson <jj@umn.edu> |
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date | Tue, 04 Dec 2012 11:05:19 -0600 |
parents | |
children | 95d75b35e4d2 |
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26:5c77423823cb | 27:49058b1f8d3f |
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1 <?xml version="1.0"?> | |
2 <datatypes> | |
3 <datatype_files> | |
4 <datatype_file name="metagenomics.py"/> | |
5 </datatype_files> | |
6 <registration> | |
7 <!-- Start Mothur Datatypes --> | |
8 <datatype extension="otu" type="galaxy.datatypes.metagenomics:Otu" display_in_upload="true"/> | |
9 <datatype extension="list" type="galaxy.datatypes.metagenomics:OtuList" display_in_upload="true"/> | |
10 <datatype extension="sabund" type="galaxy.datatypes.metagenomics:Sabund" display_in_upload="true"/> | |
11 <datatype extension="rabund" type="galaxy.datatypes.metagenomics:Rabund" display_in_upload="true"/> | |
12 <datatype extension="shared" type="galaxy.datatypes.metagenomics:SharedRabund" display_in_upload="true"/> | |
13 <datatype extension="relabund" type="galaxy.datatypes.metagenomics:RelAbund" display_in_upload="true"/> | |
14 <datatype extension="names" type="galaxy.datatypes.metagenomics:Names" display_in_upload="true"/> | |
15 <datatype extension="design" type="galaxy.datatypes.metagenomics:Design" display_in_upload="true"/> | |
16 <!-- | |
17 <datatype extension="group.metadata" type="galaxy.datatypes.metagenomics:GroupMetadata" display_in_upload="true"/> | |
18 --> | |
19 <datatype extension="summary" type="galaxy.datatypes.metagenomics:Summary" display_in_upload="true"/> | |
20 <datatype extension="groups" type="galaxy.datatypes.metagenomics:Group" display_in_upload="true"/> | |
21 <datatype extension="oligos" type="galaxy.datatypes.metagenomics:Oligos" display_in_upload="true"/> | |
22 <datatype extension="align" type="galaxy.datatypes.metagenomics:SequenceAlignment" display_in_upload="true"/> | |
23 <datatype extension="accnos" type="galaxy.datatypes.metagenomics:AccNos" display_in_upload="true"/> | |
24 <datatype extension="otulabels" type="galaxy.datatypes.metagenomics:AccNos" display_in_upload="true"/> | |
25 <datatype extension="otu.corr" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true"/> | |
26 <datatype extension="map" type="galaxy.datatypes.metagenomics:SecondaryStructureMap" display_in_upload="true"/> | |
27 <datatype extension="align.check" type="galaxy.datatypes.metagenomics:AlignCheck" display_in_upload="true"/> | |
28 <datatype extension="align.report" type="galaxy.datatypes.metagenomics:AlignReport" display_in_upload="true"/> | |
29 <datatype extension="filter" type="galaxy.datatypes.metagenomics:LaneMask" display_in_upload="true"/> | |
30 <datatype extension="dist" type="galaxy.datatypes.metagenomics:DistanceMatrix" display_in_upload="true"/> | |
31 <datatype extension="pair.dist" type="galaxy.datatypes.metagenomics:PairwiseDistanceMatrix" display_in_upload="true"/> | |
32 <datatype extension="square.dist" type="galaxy.datatypes.metagenomics:SquareDistanceMatrix" display_in_upload="true"/> | |
33 <datatype extension="lower.dist" type="galaxy.datatypes.metagenomics:LowerTriangleDistanceMatrix" display_in_upload="true"/> | |
34 <datatype extension="ref.taxonomy" type="galaxy.datatypes.metagenomics:RefTaxonomy" display_in_upload="true"> | |
35 <converter file="ref_to_seq_taxonomy_converter.xml" target_datatype="seq.taxonomy"/> | |
36 </datatype> | |
37 <datatype extension="seq.taxonomy" type="galaxy.datatypes.metagenomics:SequenceTaxonomy" display_in_upload="true"/> | |
38 <datatype extension="rdp.taxonomy" type="galaxy.datatypes.metagenomics:RDPSequenceTaxonomy" display_in_upload="true"/> | |
39 <datatype extension="cons.taxonomy" type="galaxy.datatypes.metagenomics:ConsensusTaxonomy" display_in_upload="true"/> | |
40 <datatype extension="tax.summary" type="galaxy.datatypes.metagenomics:TaxonomySummary" display_in_upload="true"/> | |
41 <datatype extension="freq" type="galaxy.datatypes.metagenomics:Frequency" display_in_upload="true"/> | |
42 <datatype extension="quan" type="galaxy.datatypes.metagenomics:Quantile" display_in_upload="true"/> | |
43 <datatype extension="filtered.quan" type="galaxy.datatypes.metagenomics:FilteredQuantile" display_in_upload="true"/> | |
44 <datatype extension="masked.quan" type="galaxy.datatypes.metagenomics:MaskedQuantile" display_in_upload="true"/> | |
45 <datatype extension="filtered.masked.quan" type="galaxy.datatypes.metagenomics:FilteredMaskedQuantile" display_in_upload="true"/> | |
46 <datatype extension="axes" type="galaxy.datatypes.metagenomics:Axes" display_in_upload="true"/> | |
47 <datatype extension="tre" type="galaxy.datatypes.data:Newick" display_in_upload="true"/> | |
48 <datatype extension="sff.flow" type="galaxy.datatypes.metagenomics:SffFlow" display_in_upload="true"/> | |
49 <datatype extension="biom" type="galaxy.datatypes.metagenomics:BiologicalObservationMatrix" display_in_upload="true"/> | |
50 <datatype extension="nhx" type="galaxy.datatypes.metagenomics:Nhx" display_in_upload="true"/> | |
51 <datatype extension="nex" type="galaxy.datatypes.metagenomics:Nexus" display_in_upload="true"/> | |
52 <datatype extension="count_table" type="galaxy.datatypes.metagenomics:CountTable" display_in_upload="true"/> | |
53 <!-- End Mothur Datatypes --> | |
54 <!-- Start Qiime Datatypes --> | |
55 <datatype extension="qiimemapping" type="galaxy.datatypes.metagenomics:QiimeMetadataMapping" display_in_upload="true"/> | |
56 <datatype extension="qiimeotu" type="galaxy.datatypes.metagenomics:QiimeOTU" display_in_upload="true"/> | |
57 <datatype extension="qiimeotutable" type="galaxy.datatypes.metagenomics:QiimeOTUTable" display_in_upload="true"/> | |
58 <datatype extension="qiimedistmat" type="galaxy.datatypes.metagenomics:QiimeDistanceMatrix" display_in_upload="true"/> | |
59 <datatype extension="qiimetaxsummary" type="galaxy.datatypes.metagenomics:QiimeTaxaSummary" display_in_upload="true"/> | |
60 <datatype extension="qiimepca" type="galaxy.datatypes.metagenomics:QiimePCA" display_in_upload="true"/> | |
61 <datatype extension="qiimeparams" type="galaxy.datatypes.metagenomics:QiimeParams" display_in_upload="true"/> | |
62 <datatype extension="qiimeprefs" type="galaxy.datatypes.metagenomics:QiimePrefs" display_in_upload="true"/> | |
63 <!-- End Qiime Datatypes --> | |
64 </registration> | |
65 <sniffers> | |
66 <sniffer type="galaxy.datatypes.metagenomics:Otu"/> | |
67 <sniffer type="galaxy.datatypes.metagenomics:Sabund"/> | |
68 <sniffer type="galaxy.datatypes.metagenomics:GroupAbund"/> | |
69 <sniffer type="galaxy.datatypes.metagenomics:SharedRabund"/> | |
70 <sniffer type="galaxy.datatypes.metagenomics:RelAbund"/> | |
71 <sniffer type="galaxy.datatypes.metagenomics:SecondaryStructureMap"/> | |
72 <sniffer type="galaxy.datatypes.metagenomics:SequenceAlignment"/> | |
73 <sniffer type="galaxy.datatypes.metagenomics:LowerTriangleDistanceMatrix"/> | |
74 <sniffer type="galaxy.datatypes.metagenomics:SquareDistanceMatrix"/> | |
75 <sniffer type="galaxy.datatypes.metagenomics:PairwiseDistanceMatrix"/> | |
76 <sniffer type="galaxy.datatypes.metagenomics:Oligos"/> | |
77 <sniffer type="galaxy.datatypes.metagenomics:Frequency"/> | |
78 <sniffer type="galaxy.datatypes.metagenomics:Quantile"/> | |
79 <sniffer type="galaxy.datatypes.metagenomics:LaneMask"/> | |
80 <sniffer type="galaxy.datatypes.metagenomics:RefTaxonomy"/> | |
81 <sniffer type="galaxy.datatypes.metagenomics:SequenceTaxonomy"/> | |
82 <sniffer type="galaxy.datatypes.metagenomics:RDPSequenceTaxonomy"/> | |
83 <sniffer type="galaxy.datatypes.metagenomics:Phylip"/> | |
84 <sniffer type="galaxy.datatypes.metagenomics:Axes"/> | |
85 <sniffer type="galaxy.datatypes.metagenomics:Newick"/> | |
86 <sniffer type="galaxy.datatypes.metagenomics:Nexus"/> | |
87 <sniffer type="galaxy.datatypes.metagenomics:BiologicalObservationMatrix"/> | |
88 <sniffer type="galaxy.datatypes.metagenomics:QiimeMetadataMapping"/> | |
89 </sniffers> | |
90 </datatypes> |