Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/lib/galaxy/datatypes/metagenomics.py @ 16:541e3c97c240
Mothur - fix set_meta for SffFlow in datatypes/metagenomics.py
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 09 Dec 2011 12:12:16 -0600 |
| parents | a6189f58fedb |
| children | 57df76d861e4 |
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| 15:a6189f58fedb | 16:541e3c97c240 |
|---|---|
| 1003 Tabular.__init__( self, **kwd ) | 1003 Tabular.__init__( self, **kwd ) |
| 1004 | 1004 |
| 1005 def set_meta( self, dataset, overwrite = True, skip = 1, max_data_lines = None, **kwd ): | 1005 def set_meta( self, dataset, overwrite = True, skip = 1, max_data_lines = None, **kwd ): |
| 1006 Tabular.set_meta(self, dataset, overwrite, 1, max_data_lines) | 1006 Tabular.set_meta(self, dataset, overwrite, 1, max_data_lines) |
| 1007 try: | 1007 try: |
| 1008 fh = open( filename ) | 1008 fh = open( dataset.file_name ) |
| 1009 line = fh.readline() | 1009 line = fh.readline() |
| 1010 line = line.strip() | 1010 line = line.strip() |
| 1011 flow_values = int(line) | 1011 flow_values = int(line) |
| 1012 dataset.metadata.flow_values = flow_values | 1012 dataset.metadata.flow_values = flow_values |
| 1013 finally: | 1013 finally: |