Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/deunique.seqs.xml @ 7:7bfe1f843858
Support Mothur v1.20
trim.seqs - added name parameter and optional trim.names output
phylo.diversity - group optional, put group and groups in conditional - breaks
get.lineage remove.lineage - allow multiple taxons
dist.shared - added processors
consensus.seqs - add cutoff parameter
trim.seqs,phylo.diversity,get.lineage,remove.lineage,dist.shared,consensus.seqs
new tools - chimera.uchime deunique.tree count.seqs
shared/relabund files - Column headings
refactor lib/galaxy/datatypes/metagenomics.py
add filters to label and group selects in tool configs
mothur_wrapper.py updated with new tools params
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 27 Jun 2011 10:12:25 -0500 |
| parents | 5265aa9067e0 |
| children | 49058b1f8d3f |
comparison
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| 6:ce6e81622c6a | 7:7bfe1f843858 |
|---|---|
| 1 <tool id="mothur_deunique_seqs" name="Deunique.seqs" version="1.19.0"> | 1 <tool id="mothur_deunique_seqs" name="Deunique.seqs" version="1.20.0"> |
| 2 <description>Return all sequences</description> | 2 <description>Return all sequences</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 mothur_wrapper.py | 4 mothur_wrapper.py |
| 5 --cmd='deunique.seqs' | 5 --cmd='deunique.seqs' |
| 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.redundant\.fasta$:'$out_fasta | 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.redundant\.fasta$:'$out_fasta |