comparison mothur/tools/mothur/deunique.tree.xml @ 35:95d75b35e4d2

Updated tools to use Mothur 1.33. Added some misc. fixes and updates (blast repository, tool fixes)

34:1be61ceb20d7

<tool id="mothur_deunique_tree" name="Deunique.tree" version="1.20.0">
 <description>Reinsert the redundant sequence identiers back into a unique tree.</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='deunique.tree'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.deunique\.tre$:'$out_tree

 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format_source="tree" name="out_tree" label="${tool.name} on ${on_string}: deunique.tre" />
 </outputs>
 <requirements>
  <requirement type="package" version="1.27">mothur</requirement>
 </requirements>
 <tests>
 </tests>
 <help>
**Mothur Overview**

The deunique.tree_ command is the reinserts the redundant sequence identiers back into a unique tree using a name_ file. 

.. _name: http://www.mothur.org/wiki/Name_file
.. _deunique.tree: http://www.mothur.org/wiki/Deunique.tree


 </help>
</tool>

35:95d75b35e4d2

<tool id="mothur_deunique_tree" name="Deunique.tree" version="1.21.0">
 <description>Reinsert the redundant sequence identiers back into a unique tree.</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='deunique.tree'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.deunique\.tre$:'$out_tree

 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format_source="tree" name="out_tree" label="${tool.name} on ${on_string}: deunique.tre" />
 </outputs>
 <requirements>
  <requirement type="package" version="1.33">mothur</requirement>
 </requirements>
 <tests>
 </tests>
 <help>
**Mothur Overview**

The deunique.tree_ command is the reinserts the redundant sequence identiers back into a unique tree using a name_ file. 

.. _name: http://www.mothur.org/wiki/Name_file
.. _deunique.tree: http://www.mothur.org/wiki/Deunique.tree

v1.21.0: Updated to Mothur 1.33


 </help>
</tool>