Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/get.relabund.xml @ 25:bfbaf823be4c
Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 16 May 2012 12:28:44 -0500 |
| parents | 7bfe1f843858 |
| children | 49058b1f8d3f |
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| 24:09740be2bc9c | 25:bfbaf823be4c |
|---|---|
| 18 </command> | 18 </command> |
| 19 <inputs> | 19 <inputs> |
| 20 <param name="otu" type="data" format="shared" label="shared - OTU Shared" | 20 <param name="otu" type="data" format="shared" label="shared - OTU Shared" |
| 21 help="Use Make.shared to create a shared file from a list and a group file"/> | 21 help="Use Make.shared to create a shared file from a list and a group file"/> |
| 22 <param name="label" type="select" label="label - OTU Labels" multiple="true"> | 22 <param name="label" type="select" label="label - OTU Labels" multiple="true"> |
| 23 <options from_dataset="otu"> | 23 <options> |
| 24 <column name="name" index="0"/> | 24 <filter type="data_meta" ref="otu" key="labels" /> |
| 25 <column name="value" index="0"/> | |
| 26 <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/> | |
| 27 <filter type="unique_value" name="unq_lbl" column="0" /> | |
| 28 </options> | 25 </options> |
| 29 </param> | 26 </param> |
| 30 <param name="groups" type="select" label="groups - Groups to consider" multiple="true"> | 27 <param name="groups" type="select" label="groups - Groups to consider" multiple="true"> |
| 31 <options from_dataset="otu"> | 28 <options> |
| 32 <column name="name" index="1"/> | 29 <filter type="data_meta" ref="otu" key="groups" /> |
| 33 <column name="value" index="1"/> | |
| 34 <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/> | |
| 35 <filter type="unique_value" name="unq_grp" column="1" /> | |
| 36 </options> | 30 </options> |
| 37 </param> | 31 </param> |
| 38 <param name="scale" type="select" label="scale - Scale by"> | 32 <param name="scale" type="select" label="scale - Scale by"> |
| 39 <option value="">Use default</option> | 33 <option value="">Use default</option> |
| 40 <option value="totalgroup" selected="true">Total Groups</option> | 34 <option value="totalgroup" selected="true">Total Groups</option> |