Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/rarefaction.single.xml @ 19:d86987601022
Move calc options in individual tools and remove tool-data/mothur_calculators.loc
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 17 Jan 2012 14:16:44 -0600 |
| parents | 4f797d3eee3a |
| children | 97e35ab2887c |
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| 18:697156806162 | 19:d86987601022 |
|---|---|
| 43 <column name="value" index="0"/> | 43 <column name="value" index="0"/> |
| 44 <filter type="unique_value" name="unq_lbl" column="0" /> | 44 <filter type="unique_value" name="unq_lbl" column="0" /> |
| 45 </options> | 45 </options> |
| 46 </param> | 46 </param> |
| 47 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> | 47 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> |
| 48 <options from_file="mothur_calculators.loc"> | 48 <option value="ace">ace - Community richness the ACE estimator</option> |
| 49 <column name="mult2" index="2"/> | 49 <option value="bootstrap">bootstrap - Community richness the bootstrap estimator</option> |
| 50 <column name="name" index="0"/> | 50 <option value="chao">chao - Community richness the Chao1 estimator</option> |
| 51 <column name="value" index="0"/> | 51 <option value="jack">jack - Community richness the jackknife estimator</option> |
| 52 <filter type="static_value" name="mult2" column="2" value="sing" /> | 52 <option value="sobs" selected="true">sobs - Community richness the observed richness</option> |
| 53 </options> | 53 <option value="simpsoneven">simpsoneven - Community evenness a Simpson index-based measure of evenness</option> |
| 54 <option value="shannoneven">shannoneven - Community evenness a Shannon index-based measure of evenness</option> | |
| 55 <option value="heip">heip - Community evenness Heip's metric of community evenness</option> | |
| 56 <option value="smithwilson">smithwilson - Community evenness Smith and Wilson's metric of community evenness</option> | |
| 57 <option value="coverage">coverage - Community diversity the sampling coverage </option> | |
| 58 <option value="simpson">simpson - Community diversity the Simpson index</option> | |
| 59 <option value="invsimpson">invsimpson - Community diversity the Simpson index</option> | |
| 60 <option value="shannon">shannon - Community diversity the Shannon index</option> | |
| 61 <option value="np_shannon">np_shannon - Community diversity the non-parametric Shannon index</option> | |
| 62 <option value="nseqs">nseqs - Utility the number of sequences in a sample</option> | |
| 54 </param> | 63 </param> |
| 55 <param name="abund" type="integer" value="10" label="abund - ACE Estimator threshold for abundant versus rare OTUs"/> | 64 <param name="abund" type="integer" value="10" label="abund - ACE Estimator threshold for abundant versus rare OTUs"/> |
| 56 <param name="iters" type="integer" value="0" label="iters - Number of randomizations"/> | 65 <param name="iters" type="integer" value="0" label="iters - Number of randomizations"/> |
| 57 <param name="freq" type="float" value="0.0" label="freq - Reporting frequency" | 66 <param name="freq" type="float" value="0.0" label="freq - Reporting frequency" |
| 58 help="if between 0 and 1 the fraction of sequences to sample, if greater than one - report every n iterations"/> | 67 help="if between 0 and 1 the fraction of sequences to sample, if greater than one - report every n iterations"/> |