Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/get.groups.xml @ 2:e990ac8a0f58
Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:39:06 -0400 |
| parents | fcc0778f6987 |
| children | 5265aa9067e0 |
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| 1:fcc0778f6987 | 2:e990ac8a0f58 |
|---|---|
| 1 <tool id="mothur_get_groups" name="Get.groups" version="1.16.0"> | 1 <tool id="mothur_get_groups" name="Get.groups" version="1.19.0"> |
| 2 <description>Select groups</description> | 2 <description>Select groups</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 mothur_wrapper.py | 4 mothur_wrapper.py |
| 5 #import re, os.path | 5 #import re, os.path |
| 6 #set results = ["'^mothur.\S+\.logfile$:'" + $logfile.__str__] | 6 #set results = ["'^mothur.\S+\.logfile$:'" + $logfile.__str__] |
| 44 </param> | 44 </param> |
| 45 <param name="accnos" type="data" format="accnos" optional="true" label="accnos - Accession Names"/> | 45 <param name="accnos" type="data" format="accnos" optional="true" label="accnos - Accession Names"/> |
| 46 <param name="fasta_in" type="data" format="fasta" optional="true" label="fasta - Fasta Sequences"/> | 46 <param name="fasta_in" type="data" format="fasta" optional="true" label="fasta - Fasta Sequences"/> |
| 47 <param name="name_in" type="data" format="names" optional="true" label="name - Sequences Name reference"/> | 47 <param name="name_in" type="data" format="names" optional="true" label="name - Sequences Name reference"/> |
| 48 <param name="list_in" type="data" format="list" optional="true" label="list - OTU List"/> | 48 <param name="list_in" type="data" format="list" optional="true" label="list - OTU List"/> |
| 49 <param name="taxonomy_in" type="data" format="taxonomy" optional="true" label="taxonomy - Taxonomy"/> | 49 <param name="taxonomy_in" type="data" format="seq.taxonomy" optional="true" label="taxonomy - Taxonomy"/> |
| 50 </inputs> | 50 </inputs> |
| 51 <outputs> | 51 <outputs> |
| 52 <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> | 52 <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> |
| 53 <data format="groups" name="group_out" label="${tool.name} on ${on_string}: pick.groups"/> | 53 <data format="groups" name="group_out" label="${tool.name} on ${on_string}: pick.groups"/> |
| 54 <!-- fix format --> | 54 <!-- fix format --> |
| 59 <filter>name_in != None</filter> | 59 <filter>name_in != None</filter> |
| 60 </data> | 60 </data> |
| 61 <data format="list" name="list_out" label="${tool.name} on ${on_string}: pick.list"> | 61 <data format="list" name="list_out" label="${tool.name} on ${on_string}: pick.list"> |
| 62 <filter>list_in != None</filter> | 62 <filter>list_in != None</filter> |
| 63 </data> | 63 </data> |
| 64 <data format="taxonomy" name="taxonomy_out" label="${tool.name} on ${on_string}: pick.taxonomy"> | 64 <data format="seq.taxonomy" name="taxonomy_out" label="${tool.name} on ${on_string}: pick.taxonomy"> |
| 65 <filter>taxonomy_in != None</filter> | 65 <filter>taxonomy_in != None</filter> |
| 66 </data> | 66 </data> |
| 67 </outputs> | 67 </outputs> |
| 68 <requirements> | 68 <requirements> |
| 69 <requirement type="binary">mothur</requirement> | 69 <requirement type="binary">mothur</requirement> |