comparison mothur/tools/mothur/indicator.xml @ 2:e990ac8a0f58

Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository

1:fcc0778f6987

<tool id="mothur_indicator" name="Indicator" version="1.16.0">
 <description>Identify indicator "species" for nodes on a tree</description>
 <command interpreter="python">
  mothur_wrapper.py 
  ## output {group_file_name}.pick.{label}.groups   {list_file_name}.pick.{label}.list 
  #import re, os.path

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The indicator_ command reads a shared or relabund file and a tree file, and outputs a .indicator.tre and .indicator.summary file. The new tree contains labels at each internal node. The label is the node number so you can relate the tree to the summary file. The summary file lists the indicator value for each OTU for each node.

.. _indicator: http://www.mothur.org/wiki/Indicator


 </help>
</tool>

2:e990ac8a0f58

<tool id="mothur_indicator" name="Indicator" version="1.19.0">
 <description>Identify indicator "species" for nodes on a tree</description>
 <command interpreter="python">
  mothur_wrapper.py 
  ## output {group_file_name}.pick.{label}.groups   {list_file_name}.pick.{label}.list 
  #import re, os.path

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The indicator_ command reads a shared_ or relabund file and a tree file, and outputs a .indicator.tre and .indicator.summary file. The new tree contains labels at each internal node. The label is the node number so you can relate the tree to the summary file. The summary file lists the indicator value for each OTU for each node.

.. _shared: http://www.mothur.org/wiki/Shared_file
.. _indicator: http://www.mothur.org/wiki/Indicator


 </help>
</tool>