comparison mothur/tools/mothur/merge.groups.xml @ 2:e990ac8a0f58

Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository

1:fcc0778f6987

<tool id="mothur_merge_groups" name="Merge.groups" version="1.16.0" >
 <description>Merge groups in a shared file</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='merge.groups'
  ## 98_sq_phylip_amazon.fn.merge.shared

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The merge.groups_ command reads a shared file and a design file and merges the groups in the shared file that are in the same grouping in the design file.

.. _merge.groups: http://www.mothur.org/wiki/Merge.groups

 </help>
</tool>

2:e990ac8a0f58

<tool id="mothur_merge_groups" name="Merge.groups" version="1.19.0" >
 <description>Merge groups in a shared file</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='merge.groups'
  ## 98_sq_phylip_amazon.fn.merge.shared

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The merge.groups_ command reads a shared_ file and a design file and merges the groups in the shared file that are in the same grouping in the design file.

A design file partitions a list of names into groups.  It is a tab-delimited file with 2 columns: name and group, e.g. :
        ======= =======
        duck    bird
        cow     mammal
        pig     mammal
        goose   bird
        cobra   reptile
        ======= =======

The Make_Design tool can construct a design file from a Mothur dataset that contains group names.

.. _shared: http://www.mothur.org/wiki/Shared_file
.. _merge.groups: http://www.mothur.org/wiki/Merge.groups

 </help>
</tool>