Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/chimera.ccode.xml @ 1:fcc0778f6987
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:35:35 -0400 |
| parents | 3202a38e44d9 |
| children | e990ac8a0f58 |
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| 0:3202a38e44d9 | 1:fcc0778f6987 |
|---|---|
| 1 <tool id="mothur_chimera_ccode" name="Chimera.ccode" version="1.15.0"> | 1 <tool id="mothur_chimera_ccode" name="Chimera.ccode" version="1.16.0"> |
| 2 <description>Find putative chimeras using ccode</description> | 2 <description>Find putative chimeras using ccode</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 mothur_wrapper.py | 4 mothur_wrapper.py |
| 5 --cmd='chimera.ccode' | 5 --cmd='chimera.ccode' |
| 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.ccode\.chimeras$:'$out_file,'^\S+\.ccode\.accnos$:'$out_accnos | 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.ccode\.chimeras$:'$out_file,'^\S+\.ccode\.accnos$:'$out_accnos |
| 17 --window=$window | 17 --window=$window |
| 18 #end if | 18 #end if |
| 19 #if int($numwanted.__str__) > 0: | 19 #if int($numwanted.__str__) > 0: |
| 20 --numwanted=$numwanted | 20 --numwanted=$numwanted |
| 21 #end if | 21 #end if |
| 22 --processors=2 | |
| 22 </command> | 23 </command> |
| 23 <inputs> | 24 <inputs> |
| 24 <param name="fasta" type="data" format="fasta" label="fasta - Candiate Sequences"/> | 25 <param name="fasta" type="data" format="fasta" label="fasta - Candiate Sequences"/> |
| 25 <conditional name="alignment"> | 26 <conditional name="alignment"> |
| 26 <param name="source" type="select" label="Select Template from" help=""> | 27 <param name="source" type="select" label="Select Template from" help=""> |