Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/collect.single.xml @ 1:fcc0778f6987
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:35:35 -0400 |
| parents | 3202a38e44d9 |
| children | e990ac8a0f58 |
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| 0:3202a38e44d9 | 1:fcc0778f6987 |
|---|---|
| 1 <tool id="mothur_collect_single" name="Collect.single" version="1.15.0" force_history_refresh="True"> | 1 <tool id="mothur_collect_single" name="Collect.single" version="1.16.0" force_history_refresh="True"> |
| 2 <description>Summary of calculator values for OTUs</description> | 2 <description>Summary of calculator values for OTUs</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 mothur_wrapper.py | 4 mothur_wrapper.py |
| 5 --cmd='collect.single' | 5 --cmd='collect.single' |
| 6 --result='^mothur.\S+\.logfile$:'$logfile | 6 --result='^mothur.\S+\.logfile$:'$logfile |
| 33 <param name="otu_group" type="data" format="groups" optional="true" label="read.otu(group=) - Group file for the OTU List"/> | 33 <param name="otu_group" type="data" format="groups" optional="true" label="read.otu(group=) - Group file for the OTU List"/> |
| 34 <param name="label" type="select" label="label - OTU Labels" multiple="true"> | 34 <param name="label" type="select" label="label - OTU Labels" multiple="true"> |
| 35 <options from_dataset="otu"> | 35 <options from_dataset="otu"> |
| 36 <column name="name" index="0"/> | 36 <column name="name" index="0"/> |
| 37 <column name="value" index="0"/> | 37 <column name="value" index="0"/> |
| 38 <filter type="unique_value" name="unq_lbl" column="0" /> | |
| 38 </options> | 39 </options> |
| 39 </param> | 40 </param> |
| 40 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> | 41 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> |
| 41 <options from_file="mothur_calulators.loc"> | 42 <options from_file="mothur_calculators.loc"> |
| 42 <column name="mult" index="1"/> | 43 <column name="mult" index="1"/> |
| 43 <column name="name" index="0"/> | 44 <column name="name" index="0"/> |
| 44 <column name="value" index="0"/> | 45 <column name="value" index="0"/> |
| 45 <filter type="static_value" name="mult" column="1" value="single" /> | 46 <filter type="static_value" name="mult" column="1" value="single" /> |
| 46 </options> | 47 </options> |