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comparison mothur/tools/mothur/dist.seqs.xml @ 1:fcc0778f6987

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Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
author jjohnson
date Tue, 07 Jun 2011 17:35:35 -0400
parents 3202a38e44d9
children e990ac8a0f58
comparison
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0:3202a38e44d9 1:fcc0778f6987
1 <tool id="mothur_dist_seqs" name="Dist.seqs" version="1.15.0"> 1 <tool id="mothur_dist_seqs" name="Dist.seqs" version="1.16.0">
2 <description>calculate uncorrected pairwise distances between aligned sequences</description> 2 <description>calculate uncorrected pairwise distances between aligned sequences</description>
3 <command interpreter="python"> 3 <command interpreter="python">
4 mothur_wrapper.py 4 mothur_wrapper.py
5 --cmd='dist.seqs' 5 --cmd='dist.seqs'
6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.dist$:'$out_dist 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.dist$:'$out_dist
14 --cutoff=$cutoff 14 --cutoff=$cutoff
15 #end if 15 #end if
16 #if len($output.__str__) > 0: 16 #if len($output.__str__) > 0:
17 --output=$output 17 --output=$output
18 #end if 18 #end if
19 --processors=2
19 </command> 20 </command>
20 <inputs> 21 <inputs>
21 <param name="fasta" type="data" format="align" label="fasta - Alignment Fasta"/> 22 <param name="fasta" type="data" format="align" label="fasta - Alignment Fasta"/>
22 <param name="calc" type="select" label="calc - Calc Method - Gap Penality" help=""> 23 <param name="calc" type="select" label="calc - Calc Method - Gap Penality" help="">
23 <option value="">use default</option> 24 <option value="">use default</option>