comparison mothur/tools/mothur/pcoa.xml @ 1:fcc0778f6987

Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository

0:3202a38e44d9

<tool id="mothur_pcoa" name="Pcoa" version="1.15.0" >
 <description>Principal Coordinate Analysis</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='pcoa'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.pcoa$:'$pca,'^\S+\.pcoa.loadings$:'$loadings
  --outputdir='$logfile.extra_files_path'
  --phylip=$phylip
 </command>
 <inputs>
  <param name="phylip" type="data" format="lower.dist,square.dist" label="phylip - Phylip Distance Matrix"/>
 </inputs>
 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format="tabular" name="pca" label="${tool.name} on ${on_string}: PCA" />
  <data format="tabular" name="loadings" label="${tool.name} on ${on_string}: loadings" />
 </outputs>
 <requirements>
  <requirement type="binary">mothur</requirement>
 </requirements>

1:fcc0778f6987

<tool id="mothur_pcoa" name="Pcoa" version="1.16.0" >
 <description>Principal Coordinate Analysis</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='pcoa'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.pcoa\.axes$:'$pcoa,'^\S+\.pcoa.loadings$:'$loadings
  --outputdir='$logfile.extra_files_path'
  --phylip=$phylip
 </command>
 <inputs>
  <param name="phylip" type="data" format="lower.dist,square.dist" label="phylip - Phylip Distance Matrix"/>
 </inputs>
 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format="axes" name="pcoa" label="${tool.name} on ${on_string}: pcoa.axes" />
  <data format="tabular" name="loadings" label="${tool.name} on ${on_string}: loadings" />
 </outputs>
 <requirements>
  <requirement type="binary">mothur</requirement>
 </requirements>