Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/phylo.diversity.xml @ 1:fcc0778f6987
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:35:35 -0400 |
| parents | 3202a38e44d9 |
| children | e990ac8a0f58 |
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| 0:3202a38e44d9 | 1:fcc0778f6987 |
|---|---|
| 1 <tool id="mothur_phylo_diversity" name="Phylo.diversity" version="1.15.0"> | 1 <tool id="mothur_phylo_diversity" name="Phylo.diversity" version="1.16.0"> |
| 2 <description>Alpha Diversity calculate unique branch length</description> | 2 <description>Alpha Diversity calculate unique branch length</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 mothur_wrapper.py | 4 mothur_wrapper.py |
| 5 --cmd='phylo.diversity' | 5 --cmd='phylo.diversity' |
| 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.phylodiv\.summary$:'$summary_out,'^\S+\.phylodiv$:'$collectors_out,'^\S+\.rarefaction$:'$rarefaction_out | 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.phylodiv\.summary$:'$summary_out,'^\S+\.phylodiv$:'$collectors_out,'^\S+\.rarefaction$:'$rarefaction_out |
| 21 #end if | 21 #end if |
| 22 $scale | 22 $scale |
| 23 $summary | 23 $summary |
| 24 $collect | 24 $collect |
| 25 $rarefy | 25 $rarefy |
| 26 --processors=2 | |
| 26 </command> | 27 </command> |
| 27 <inputs> | 28 <inputs> |
| 28 <!-- list,group or shared --> | 29 <!-- list,group or shared --> |
| 29 <param name="tree" type="data" format="tre" label="read.tree(tree=) - Phylogenetic Tree"/> | 30 <param name="tree" type="data" format="tre" label="read.tree(tree=) - Phylogenetic Tree"/> |
| 30 <param name="group" type="data" format="groups" label="read.tree(group=) - Group file for the tree"/> | 31 <param name="group" type="data" format="groups" label="read.tree(group=) - Group file for the tree"/> |