Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/read.otu.xml @ 1:fcc0778f6987
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:35:35 -0400 |
| parents | 3202a38e44d9 |
| children |
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| 0:3202a38e44d9 | 1:fcc0778f6987 |
|---|---|
| 1 <tool id="mothur_read_otu" name="Read.otu" version="1.15.0" force_history_refresh="True"> | 1 <tool id="mothur_read_otu" name="Read.otu" version="1.16.0" force_history_refresh="True"> |
| 2 <description>Read OTU list and group to create a shared file</description> | 2 <description>Read OTU list and group to create a shared file</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 mothur_wrapper.py | 4 mothur_wrapper.py |
| 5 --cmd='read.otu' | 5 --cmd='read.otu' |
| 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.shared:'$shared | 6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.shared:'$shared |
| 7 --outputdir='$logfile.extra_files_path' | 7 --outputdir='$logfile.extra_files_path' |
| 8 #if $show_rabund.value == True: | 8 #if $show_rabund.value == True: |
| 9 --datasetid='$logfile.id' --new_file_path='$__new_file_path__' | 9 --datasetid='$logfile.id' --new_file_path='$__new_file_path__' |
| 10 --new_datasets='^\S+?\.((\S+)\.rabund)$:rabund' | 10 --new_datasets='^\S+?\.((\S+)\.rabund)$:rabund' |
| 11 #end if | 11 #end if |
| 12 --cmd='read.otu' | |
| 13 --list=$otu | 12 --list=$otu |
| 14 --group=$otu_group | 13 --group=$otu_group |
| 15 #if $label.__str__ != "None" and len($label.__str__) > 0: | 14 #if $label.__str__ != "None" and len($label.__str__) > 0: |
| 16 --label='$label' | 15 --label='$label' |
| 17 #end if | 16 #end if |