Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/summary.single.xml @ 1:fcc0778f6987
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:35:35 -0400 |
| parents | 3202a38e44d9 |
| children | e990ac8a0f58 |
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| 0:3202a38e44d9 | 1:fcc0778f6987 |
|---|---|
| 1 <tool id="mothur_summary_single" name="Summary.single" version="1.15.0" force_history_refresh="True"> | 1 <tool id="mothur_summary_single" name="Summary.single" version="1.16.0" force_history_refresh="True"> |
| 2 <description>Summary of calculator values for OTUs</description> | 2 <description>Summary of calculator values for OTUs</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 mothur_wrapper.py | 4 mothur_wrapper.py |
| 5 --cmd='summary.single' | 5 --cmd='summary.single' |
| 6 --result='^mothur.\S+\.logfile$:'$logfile | 6 --result='^mothur.\S+\.logfile$:'$logfile |
| 23 #end if | 23 #end if |
| 24 #if int($size.__str__) > 0: | 24 #if int($size.__str__) > 0: |
| 25 --size=$size | 25 --size=$size |
| 26 #end if | 26 #end if |
| 27 $groupmode | 27 $groupmode |
| 28 --processors=2 | |
| 28 </command> | 29 </command> |
| 29 <inputs> | 30 <inputs> |
| 30 <param name="otu" type="data" format="list" label="read.otu(list=) - OTU List"/> | 31 <param name="otu" type="data" format="list" label="read.otu(list=) - OTU List"/> |
| 31 <param name="otu_group" type="data" format="groups" optional="true" label="read.otu(group=) - Group file for the OTU List"/> | 32 <param name="otu_group" type="data" format="groups" optional="true" label="read.otu(group=) - Group file for the OTU List"/> |
| 32 <param name="label" type="select" label="label - OTU Labels" multiple="true"> | 33 <param name="label" type="select" label="label - OTU Labels" multiple="true"> |
| 34 <column name="name" index="0"/> | 35 <column name="name" index="0"/> |
| 35 <column name="value" index="0"/> | 36 <column name="value" index="0"/> |
| 36 </options> | 37 </options> |
| 37 </param> | 38 </param> |
| 38 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> | 39 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> |
| 39 <options from_file="mothur_calulators.loc"> | 40 <options from_file="mothur_calculators.loc"> |
| 40 <column name="mult" index="1"/> | 41 <column name="mult" index="1"/> |
| 41 <column name="name" index="0"/> | 42 <column name="name" index="0"/> |
| 42 <column name="value" index="0"/> | 43 <column name="value" index="0"/> |
| 43 <filter type="static_value" name="mult" column="1" value="single" /> | 44 <filter type="static_value" name="mult" column="1" value="single" /> |
| 44 </options> | 45 </options> |