comparison mothur/tools/mothur/tree.shared.xml @ 1:fcc0778f6987

Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository

0:3202a38e44d9

<tool id="mothur_tree_shared" name="Tree.shared" version="1.15.0" force_history_refresh="True">
 <description>Generate a newick tree for dissimilarity among groups</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='tree.shared'
  --result='^mothur.\S+\.logfile$:'$logfile

     <param name="otu" type="data" format="shared" label="read.otu(shared=) - OTU Shared"/>
     <param name="label" type="select" label="label - OTU Labels" multiple="true">
      <options from_dataset="otu">
       <column name="name" index="0"/>
       <column name="value" index="0"/>
      </options>
     </param>
     <param name="groups" type="select" label="groups - Groups to consider" multiple="true">
      <options from_dataset="otu">
       <column name="name" index="1"/>

      </options>
     </param>
   </when>
  </conditional>
  <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true">
   <options from_file="mothur_calulators.loc">
     <column name="mult2" index="2"/>
     <column name="name" index="0"/>
     <column name="value" index="0"/>
     <filter type="static_value" name="mult2" column="2" value="shar" />
   </options>

1:fcc0778f6987

<tool id="mothur_tree_shared" name="Tree.shared" version="1.16.0" force_history_refresh="True">
 <description>Generate a newick tree for dissimilarity among groups</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='tree.shared'
  --result='^mothur.\S+\.logfile$:'$logfile

     <param name="otu" type="data" format="shared" label="read.otu(shared=) - OTU Shared"/>
     <param name="label" type="select" label="label - OTU Labels" multiple="true">
      <options from_dataset="otu">
       <column name="name" index="0"/>
       <column name="value" index="0"/>
       <filter type="unique_value" name="unq_lbl" column="0" />
      </options>
     </param>
     <param name="groups" type="select" label="groups - Groups to consider" multiple="true">
      <options from_dataset="otu">
       <column name="name" index="1"/>

      </options>
     </param>
   </when>
  </conditional>
  <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true">
   <options from_file="mothur_calculators.loc">
     <column name="mult2" index="2"/>
     <column name="name" index="0"/>
     <column name="value" index="0"/>
     <filter type="static_value" name="mult2" column="2" value="shar" />
   </options>