diff mothur/tools/mothur/TreeVector.xml @ 0:3202a38e44d9

Migrated tool version 1.15.1 from old tool shed archive to new tool shed repository

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mothur/tools/mothur/TreeVector.xml	Tue Jun 07 17:32:23 2011 -0400
@@ -0,0 +1,42 @@
+<tool id="tree_vector" name="TreeVector" version="1.0">
+ <description>Draw a Phylogenic Tree</description>
+ <command interpreter="python">TreeVector.py
+  --jarBin='${GALAXY_DATA_INDEX_DIR}/shared/jars'
+  --jarFile='TreeVector.jar'
+  --jvmArgs='-Xmx250m'
+  --input=$tree
+  --svg=$output
+  --shape=$shape
+  --length=$length
+ </command>
+ <inputs>
+  <param name="tree" type="data" format="tre" label="A Phylogenetic Tree in Newick format"/>
+  <param name="shape" type="select" label="Branch Shape">
+   <option value="square">Square branches</option>
+   <option value="triangle">Triangle branches</option>
+  </param>  
+  <param name="length" type="select" label="Branch Length">
+   <option value="phylo" selected="true">Use Newick branch lengths</option>
+   <option value="clad">Line up labels</option>
+   <option value="simpleclad">Branch lengths all same length</option>
+  </param>  
+ </inputs>
+ <outputs>
+    <data format="svg" name="output"> </data>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+
+TreeVector_ is a utility to create and integrate phylogenetic trees as Scalable Vector Graphics (SVG) files.
+
+TreeVector_ was written by Ralph_Pethica_, Department_of_Computer_Science_, University_of_Bristol_
+
+.. _TreeVector: http://supfam.cs.bris.ac.uk/TreeVector/about.html
+.. _Ralph_Pethica: http://www.cs.bris.ac.uk/home/pethica/
+.. _Department_of_Computer_Science: http://www.cs.bris.ac.uk/
+.. _University_of_Bristol: http://www.bris.ac.uk/
+
+ </help>
+</tool>
+