Mercurial > repos > jjohnson > mothur_toolsuite
diff mothur/tools/mothur/merge.files.xml @ 0:3202a38e44d9
Migrated tool version 1.15.1 from old tool shed archive to new tool shed repository
author | jjohnson |
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date | Tue, 07 Jun 2011 17:32:23 -0400 |
parents | |
children | fcc0778f6987 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mothur/tools/mothur/merge.files.xml Tue Jun 07 17:32:23 2011 -0400 @@ -0,0 +1,43 @@ +<tool id="mothur_merge_files" name="Merge.files" version="1.15.0"> + <description>Merge data</description> + <command interpreter="python"> + mothur_wrapper.py + --cmd='merge.files' + --result='^mothur.\S+\.logfile$:'$logfile,'mergefile:'$output + --outputdir='$logfile.extra_files_path' + --input=${input}#for i in $inputs#,${i.input}#end for# + --output='mergefile' + </command> + <inputs> + <param name="input" type="data" format="fasta" label="input - Dataset"/> + <repeat name="inputs" title="Files to Merge"> + <param name="input" type="data" format="fasta" label="input - Dataset"/> + </repeat> + </inputs> + <outputs> + <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> + <data format="input" name="output" label="${tool.name} on ${on_string}: fasta" /> + </outputs> + <requirements> + <requirement type="binary">mothur</requirement> + </requirements> + <tests> + </tests> + <help> +**Mothur Overview** + +Mothur_, initiated by Dr. Patrick Schloss and his software development team +in the Department of Microbiology and Immunology at The University of Michigan, +provides bioinformatics for the microbial ecology community. + +.. _Mothur: http://www.mothur.org/wiki/Main_Page + +**Command Documenation** + +The merge.files_ command merge inputs into a single output. + +.. _merge.files: http://www.mothur.org/wiki/Merge.files + + + </help> +</tool>