Mercurial > repos > jjohnson > mothur_toolsuite

diff mothur/tools/mothur/remove.seqs.xml @ 4:5265aa9067e0

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set output formats to match input formats
author jjohnson
date Wed, 08 Jun 2011 15:02:44 -0500
parents e990ac8a0f58
children 7bfe1f843858
line wrap: on
line diff
--- a/mothur/tools/mothur/remove.seqs.xml	Wed Jun 08 14:59:08 2011 -0500
+++ b/mothur/tools/mothur/remove.seqs.xml	Wed Jun 08 15:02:44 2011 -0500
@@ -58,14 +58,14 @@
    <filter>fasta_in != None</filter>
   </data>
   -->
-  <data format="fasta" metadata_source="fasta_in" name="fasta_out" label="${tool.name} on ${on_string}: pick.${fasta_in.datatype.file_ext}">
+  <data format_source="fasta_in" metadata_source="fasta_in" name="fasta_out" label="${tool.name} on ${on_string}: pick.${fasta_in.datatype.file_ext}">
    <filter>fasta_in != None</filter>
    <change_format>
      <when input="${fasta_in.datatype.file_ext}" value="align" format="align" />
    </change_format>
   </data>
   <!-- format should be set to match input -->
-  <data format="qual" name="qfile_out" label="${tool.name} on ${on_string}: pick.qfile">
+  <data format_source="qfile_in" name="qfile_out" label="${tool.name} on ${on_string}: pick.qfile">
    <filter>qfile_in != None</filter>
    <change_format>
      <when input="${qfile_in.datatype.file_ext}" value="qual454" format="qual454" />