diff mothur/tools/mothur/split.abund.xml @ 4:5265aa9067e0

set output formats to match input formats

--- a/mothur/tools/mothur/split.abund.xml	Wed Jun 08 14:59:08 2011 -0500
+++ b/mothur/tools/mothur/split.abund.xml	Wed Jun 08 15:02:44 2011 -0500
@@ -10,10 +10,10 @@
   #set datasets = []
   #if $as_datasets.__str__ == "yes":
    --datasetid='$logfile.id' --new_file_path='$__new_file_path__'
-   --new_datasets='^\S+?\.((unique|[0-9.]+)\.(rare|abund)\.fasta)$:fasta','^\S+?\.((unique|[0-9.]+)\.(rare|abund)\.groups)$:groups','^\S+?\.((unique|[0-9.]+)\.(rare|abund)\.accnos)$:accnos'
+   --new_datasets='^\S+?\.((unique|[0-9.]+)\.(rare|abund)\.fasta)$:${fasta.ext}','^\S+?\.((unique|[0-9.]+)\.(rare|abund)\.groups)$:groups','^\S+?\.((unique|[0-9.]+)\.(rare|abund)\.accnos)$:accnos'
   #end if
   --fasta=$fasta
-  #set datasets = $datasets + ["'" + $re.sub(r'(^.*)\.(.*?)$',r'^\1.(.*\.fasta)$',$os.path.basename($fasta.__str__)) + ":fasta'"]
+  #set datasets = $datasets + ["'" + $re.sub(r'(^.*)\.(.*?)$',r'^\1.(.*\.fasta)$',$os.path.basename($fasta.__str__)) + ":" + $fasta.ext + "'"]
   #if $search.type == "list":
    --list=$search.input
    #set datasets = $datasets + ["'" + $re.sub(r'(^.*)\.(.*?)$',r'^\1.(.*\.list)$',$os.path.basename($search.input.__str__)) + ":list'"]