Mercurial > repos > jjohnson > mothur_toolsuite
diff mothur/tools/mothur/get.relabund.xml @ 7:7bfe1f843858
Support Mothur v1.20
trim.seqs - added name parameter and optional trim.names output
phylo.diversity - group optional, put group and groups in conditional - breaks
get.lineage remove.lineage - allow multiple taxons
dist.shared - added processors
consensus.seqs - add cutoff parameter
trim.seqs,phylo.diversity,get.lineage,remove.lineage,dist.shared,consensus.seqs
new tools - chimera.uchime deunique.tree count.seqs
shared/relabund files - Column headings
refactor lib/galaxy/datatypes/metagenomics.py
add filters to label and group selects in tool configs
mothur_wrapper.py updated with new tools params
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Mon, 27 Jun 2011 10:12:25 -0500 |
parents | e990ac8a0f58 |
children | bfbaf823be4c |
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--- a/mothur/tools/mothur/get.relabund.xml Mon Jun 27 09:34:14 2011 -0500 +++ b/mothur/tools/mothur/get.relabund.xml Mon Jun 27 10:12:25 2011 -0500 @@ -1,4 +1,4 @@ -<tool id="mothur_get_relabund" name="Get.relabund" version="1.19.0"> +<tool id="mothur_get_relabund" name="Get.relabund" version="1.20.0"> <description>Calculate the relative abundance of each otu</description> <command interpreter="python"> mothur_wrapper.py @@ -23,6 +23,7 @@ <options from_dataset="otu"> <column name="name" index="0"/> <column name="value" index="0"/> + <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/> <filter type="unique_value" name="unq_lbl" column="0" /> </options> </param> @@ -30,6 +31,7 @@ <options from_dataset="otu"> <column name="name" index="1"/> <column name="value" index="1"/> + <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/> <filter type="unique_value" name="unq_grp" column="1" /> </options> </param>