diff mothur/tools/mothur/heatmap.bin.xml @ 7:7bfe1f843858

Support Mothur v1.20 trim.seqs - added name parameter and optional trim.names output phylo.diversity - group optional, put group and groups in conditional - breaks get.lineage remove.lineage - allow multiple taxons dist.shared - added processors consensus.seqs - add cutoff parameter trim.seqs,phylo.diversity,get.lineage,remove.lineage,dist.shared,consensus.seqs new tools - chimera.uchime deunique.tree count.seqs shared/relabund files - Column headings refactor lib/galaxy/datatypes/metagenomics.py add filters to label and group selects in tool configs mothur_wrapper.py updated with new tools params

--- a/mothur/tools/mothur/heatmap.bin.xml	Mon Jun 27 09:34:14 2011 -0500
+++ b/mothur/tools/mothur/heatmap.bin.xml	Mon Jun 27 10:12:25 2011 -0500
@@ -1,4 +1,4 @@
-<tool id="mothur_heatmap_bin" name="Heatmap.bin" version="1.19.0"  force_history_refresh="True">
+<tool id="mothur_heatmap_bin" name="Heatmap.bin" version="1.20.0"  force_history_refresh="True">
  <description>Generate a heatmap for OTUs</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -52,6 +52,7 @@
       <options from_dataset="otu">
        <column name="name" index="1"/>
        <column name="value" index="1"/>
+       <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/>
        <filter type="unique_value" name="unq_grp" column="1" />
       </options>
      </param>
@@ -59,6 +60,7 @@
       <options from_dataset="otu">
        <column name="name" index="0"/>
        <column name="value" index="0"/>
+       <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/>
        <filter type="unique_value" name="unq_lbl" column="0" />
       </options>
      </param>
@@ -75,7 +77,7 @@
    </when>
    <when value="yes">
      <param name="otu" type="data" format="list,rabund,sabund" label="list,rabund,sabund - OTU List"/>
-     <param name="otu_group" type="data" format="groups" label="read.otu(group) - Group file for the OTU List"/>
+     <param name="otu_group" type="data" format="groups" label="group - Group file for the OTU List"/>
      <param name="groups" type="select" label="groups - Groups to include" multiple="true">
       <options from_dataset="otu_group">
        <column name="name" index="1"/>