diff mothur/tools/mothur/remove.rare.xml @ 7:7bfe1f843858

Support Mothur v1.20 trim.seqs - added name parameter and optional trim.names output phylo.diversity - group optional, put group and groups in conditional - breaks get.lineage remove.lineage - allow multiple taxons dist.shared - added processors consensus.seqs - add cutoff parameter trim.seqs,phylo.diversity,get.lineage,remove.lineage,dist.shared,consensus.seqs new tools - chimera.uchime deunique.tree count.seqs shared/relabund files - Column headings refactor lib/galaxy/datatypes/metagenomics.py add filters to label and group selects in tool configs mothur_wrapper.py updated with new tools params

--- a/mothur/tools/mothur/remove.rare.xml	Mon Jun 27 09:34:14 2011 -0500
+++ b/mothur/tools/mothur/remove.rare.xml	Mon Jun 27 10:12:25 2011 -0500
@@ -1,4 +1,4 @@
-<tool id="mothur_remove_rare" name="Remove.rare" version="1.19.0">
+<tool id="mothur_remove_rare" name="Remove.rare" version="1.20.0">
  <description>Remove rare OTUs</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -50,6 +50,7 @@
      <options from_dataset="otu">
       <column name="name" index="1"/>
       <column name="value" index="1"/>
+      <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/>
       <filter type="unique_value" name="unq_grp" column="1" />
      </options>
     </param>
@@ -58,6 +59,7 @@
      <options from_dataset="otu">
       <column name="name" index="0"/>
       <column name="value" index="0"/>
+      <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/>
       <filter type="unique_value" name="unq_lbl" column="0" />
      </options>
     </param>