diff mothur/tools/mothur/tree.shared.xml @ 7:7bfe1f843858

Support Mothur v1.20 trim.seqs - added name parameter and optional trim.names output phylo.diversity - group optional, put group and groups in conditional - breaks get.lineage remove.lineage - allow multiple taxons dist.shared - added processors consensus.seqs - add cutoff parameter trim.seqs,phylo.diversity,get.lineage,remove.lineage,dist.shared,consensus.seqs new tools - chimera.uchime deunique.tree count.seqs shared/relabund files - Column headings refactor lib/galaxy/datatypes/metagenomics.py add filters to label and group selects in tool configs mothur_wrapper.py updated with new tools params

--- a/mothur/tools/mothur/tree.shared.xml	Mon Jun 27 09:34:14 2011 -0500
+++ b/mothur/tools/mothur/tree.shared.xml	Mon Jun 27 10:12:25 2011 -0500
@@ -1,4 +1,4 @@
-<tool id="mothur_tree_shared" name="Tree.shared" version="1.19.0" force_history_refresh="True">
+<tool id="mothur_tree_shared" name="Tree.shared" version="1.20.0" force_history_refresh="True">
  <description>Generate a newick tree for dissimilarity among groups</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -56,6 +56,7 @@
       <options from_dataset="dist">
        <column name="name" index="0"/>
        <column name="value" index="0"/>
+       <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/>
        <filter type="unique_value" name="unq_lbl" column="0" />
       </options>
      </param>
@@ -63,6 +64,7 @@
       <options from_dataset="dist">
        <column name="name" index="1"/>
        <column name="value" index="1"/>
+       <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/>
        <filter type="unique_value" name="unq_grp" column="1" />
       </options>
      </param>