diff mothur/tools/mothur/create.database.xml @ 35:95d75b35e4d2

Updated tools to use Mothur 1.33. Added some misc. fixes and updates (blast repository, tool fixes)

--- a/mothur/tools/mothur/create.database.xml	Mon Sep 22 11:19:09 2014 -0400
+++ b/mothur/tools/mothur/create.database.xml	Fri Oct 31 15:09:32 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="mothur_create_database" name="Create.database" version="1.27.0" >
+<tool id="mothur_create_database" name="Create.database" version="1.28.0" >
  <description>creates a database file from a list, repnames, repfasta and contaxonomy file</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -28,6 +28,7 @@
          help="fasta file output by get.oturep"/>
   <param name="repname" type="data" format="names" label="repname - rep.names"
          help="names file output by get.oturep"/>
+	<param name="count" type="data" format="count_table" label="count file - count_table"/>		 
   <param name="contaxonomy" type="select" format="cons.taxonomy" label="contaxonomy - Consensus Taxonomy"
          help="consensus taxonomy file output by classify.otu"/>
   <param name="group" type="data" format="groups" optional="true" label="group - Groups for summary file"/>
@@ -42,7 +43,7 @@
   <data format="tabular" name="database" label="${tool.name} on ${on_string}: database" />
  </outputs>
  <requirements>
-  <requirement type="package" version="1.27">mothur</requirement>
+  <requirement type="package" version="1.33">mothur</requirement>
  </requirements>
  <tests>
  </tests>
@@ -63,6 +64,8 @@
 .. _shared: http://www.mothur.org/wiki/Shared_file
 .. _create.database: http://www.mothur.org/wiki/Create.database
 
+v.1.28.0: Updated to Mothur 1.33, added count paramter.
+
 
  </help>
 </tool>