diff mothur/tools/mothur/trim.flows.xml @ 35:95d75b35e4d2

Updated tools to use Mothur 1.33. Added some misc. fixes and updates (blast repository, tool fixes)

--- a/mothur/tools/mothur/trim.flows.xml	Mon Sep 22 11:19:09 2014 -0400
+++ b/mothur/tools/mothur/trim.flows.xml	Fri Oct 31 15:09:32 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="mothur_trim_flows" name="Trim.flows" version="1.22.0" force_history_refresh="True">
+<tool id="mothur_trim_flows" name="Trim.flows" version="1.23.0" force_history_refresh="True">
  <description>partition by barcode, trim to length, cull by lenght and mismatches</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -97,8 +97,8 @@
          help="default .7">
    <validator type="in_range" message="signal between 0. and 1." min="0.0" max="1.0"/>
   </param>
-  <param name="order" type="text" value="" label="order - flow order for nucleotides in the sequencer" 
-         help="default is TACG"/>
+  <param name="order" type="text" value="A" label="order - flow order for nucleotides in the sequencer"
+         help="default is A, was TACG. Also accepts B or I"/>
 
   <param name="fasta" type="boolean" truevalue="--fasta=true" falsevalue="" checked="false" label="fasta - translate the flowgram data to fasta sequence format"/>
 
@@ -115,7 +115,7 @@
   </data>
  </outputs>
  <requirements>
-  <requirement type="package" version="1.27">mothur</requirement>
+  <requirement type="package" version="1.33">mothur</requirement>
  </requirements>
  <tests>
  </tests>