diff mothur/tools/mothur/unique.seqs.xml @ 35:95d75b35e4d2

Updated tools to use Mothur 1.33. Added some misc. fixes and updates (blast repository, tool fixes)

--- a/mothur/tools/mothur/unique.seqs.xml	Mon Sep 22 11:19:09 2014 -0400
+++ b/mothur/tools/mothur/unique.seqs.xml	Fri Oct 31 15:09:32 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="mothur_unique_seqs" name="Unique.seqs" version="1.20.0">
+<tool id="mothur_unique_seqs" name="Unique.seqs" version="1.21.0">
  <description>Return unique sequences</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -9,10 +9,17 @@
   #if $names.__str__ != "None" and len($names.__str__) > 0:
    --name=$names
   #end if
+
+  #if $count.__str__ != "None" and len($count.__str__) > 0:
+    --count=$count
+  #end if
  </command>
  <inputs>
   <param name="fasta" type="data" format="fasta" label="fasta - Sequences to filter"/>
   <param name="names" type="data" format="names" optional="true" label="names - Sequences Names"/>
+
+  <param name="count" type="data" format="count_table" optional="true" label="count - a count_table" 
+         help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence. It can also contain group information."/>
  </inputs>
  <outputs>
   <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
@@ -20,7 +27,7 @@
   <data format="names" name="out_names" label="${tool.name} on ${on_string}: names" />
  </outputs>
  <requirements>
-  <requirement type="package" version="1.27">mothur</requirement>
+  <requirement type="package" version="1.33">mothur</requirement>
  </requirements>
  <tests>
  </tests>