diff mothur/tools/mothur/sub.sample.xml @ 15:a6189f58fedb

Mothur - updated for Mothur version 1.22.0

--- a/mothur/tools/mothur/sub.sample.xml	Wed Oct 05 10:37:11 2011 -0500
+++ b/mothur/tools/mothur/sub.sample.xml	Tue Nov 08 11:45:32 2011 -0600
@@ -1,4 +1,4 @@
-<tool id="mothur_sub_sample" name="Sub.sample" version="1.21.0">
+<tool id="mothur_sub_sample" name="Sub.sample" version="1.22.0">
  <description>Create a sub sample</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -12,7 +12,7 @@
    #set results = $results + ["'" + $re.sub(r'(^.*)\.(.*?)',r'\1\\.subsample\\.\2',$os.path.basename($input.fasta_in.__str__)) + ":'" + $fasta_out.__str__]
    #if $input.name_in.__str__ != "None" and len($input.name_in.__str__) > 0:
     --name=$input.name_in
-    ## #set results = $results + ["'" + $re.sub(r'(^.*)\.(.*?)',r'\1\\.subsample\\.\2',$os.path.basename($input.name_in.__str__)) + ":'" + $names_out.__str__]
+    #set results = $results + ["'" + $re.sub(r'(^.*)\.(.*?)',r'\1\\.subsample\\.\2',$os.path.basename($input.name_in.__str__)) + ":'" + $names_out.__str__]
    #end if
    #if $input.use_group.to_filter == "yes":
     #if $input.use_group.group_in.__str__ != "None" and len($input.use_group.group_in.__str__) > 0:
@@ -183,10 +183,10 @@
    <filter>input['format'] == 'rabund'</filter>
   </data>
   <!--  This doesn't appear to be generated even though the documentation says it is
+  -->
   <data format="names" name="names_out" label="${tool.name} on ${on_string}: subsample.names">
    <filter>(input['format'] == 'fasta' and input['name_in'] != None)</filter>
   </data>
-  -->
   <data format="groups" name="group_out" label="${tool.name} on ${on_string}: subsample.groups">
    <filter>((input['format'] == 'fasta' or input['format'] == 'list') and input['use_group'] == 'yes')</filter>
   </data>