Mercurial > repos > jjohnson > mothur_toolsuite

diff mothur/tools/mothur/bin.seqs.xml @ 25:bfbaf823be4c

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Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
author Jim Johnson <jj@umn.edu>
date Wed, 16 May 2012 12:28:44 -0500
parents 7bfe1f843858
children 49058b1f8d3f
line wrap: on
line diff
--- a/mothur/tools/mothur/bin.seqs.xml	Wed Mar 28 15:45:03 2012 -0500
+++ b/mothur/tools/mothur/bin.seqs.xml	Wed May 16 12:28:44 2012 -0500
@@ -24,9 +24,8 @@
   <param name="otu" type="data" format="list" label="list - OTU List"/>
   <param name="name" type="data" format="names" optional="true" label="name - Sequences Name reference"/>
   <param name="label" type="select" label="label - OTU Labels" multiple="true">
-   <options from_dataset="otu">
-    <column name="name" index="0"/>
-    <column name="value" index="0"/>
+   <options>
+    <filter type="data_meta" ref="otu" key="labels" />
    </options>
   </param>
   <param name="group" type="data" format="group" optional="true" label="group - Sequences Name reference"/>