Mercurial > repos > jjohnson > mothur_toolsuite

diff mothur/tools/mothur/get.sabund.xml @ 25:bfbaf823be4c

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
author Jim Johnson <jj@umn.edu>
date Wed, 16 May 2012 12:28:44 -0500
parents e990ac8a0f58
children 49058b1f8d3f
line wrap: on
line diff
--- a/mothur/tools/mothur/get.sabund.xml	Wed Mar 28 15:45:03 2012 -0500
+++ b/mothur/tools/mothur/get.sabund.xml	Wed May 16 12:28:44 2012 -0500
@@ -17,9 +17,8 @@
  <inputs>
   <param name="otu" type="data" format="list,rabund" label="list,rabund - List or Rabund"/>
   <param name="label" type="select" multiple="true" label="label - select OTU distance labels" help="(all used if none are selected)">
-   <options from_dataset="otu">
-    <column name="name" index="0"/>
-    <column name="value" index="0"/>
+   <options>
+    <filter type="data_meta" ref="otu" key="labels" />
    </options>
   </param>
  </inputs>