diff mothur/tools/mothur/split.abund.xml @ 25:bfbaf823be4c

Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.

--- a/mothur/tools/mothur/split.abund.xml	Wed Mar 28 15:45:03 2012 -0500
+++ b/mothur/tools/mothur/split.abund.xml	Wed May 16 12:28:44 2012 -0500
@@ -59,9 +59,8 @@
    <when value="list">
     <param name="input" type="data" format="list" label="list - OTU List"/>
     <param name="label" type="select" label="label - OTU Labels" multiple="true" help="Select OTU Labels to filter out all but selected labels">
-     <options from_dataset="input">
-      <column name="name" index="0"/>
-      <column name="value" index="0"/>
+     <options>
+      <filter type="data_meta" ref="input" key="labels" />
      </options>
     </param>
    </when>
@@ -76,10 +75,8 @@
    <when value="yes">
     <param name="group" type="data" format="groups" label="group - Group dataset"/>
     <param name="groups" type="select" label="groups - Group Selection (all used if none are selected)" multiple="true">
-     <options from_dataset="group">
-      <column name="name" index="1"/>
-      <column name="value" index="1"/>
-      <filter type="unique_value" name="unq_grp" column="1" />
+     <options>
+      <filter type="data_meta" ref="group" key="groups" />
      </options>
     </param>
    </when>