Mercurial > repos > jjohnson > mothur_toolsuite
diff mothur/tools/mothur/tree.shared.xml @ 25:bfbaf823be4c
Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Wed, 16 May 2012 12:28:44 -0500 |
parents | ed906f8149bb |
children | 5c77423823cb |
line wrap: on
line diff
--- a/mothur/tools/mothur/tree.shared.xml Wed Mar 28 15:45:03 2012 -0500 +++ b/mothur/tools/mothur/tree.shared.xml Wed May 16 12:28:44 2012 -0500 @@ -53,19 +53,13 @@ <param name="dist" type="data" format="shared" label="shared - OTU Shared"/> <param name="as_datasets" type="boolean" truevalue="yes" falsevalue="no" checked="true" label="Create a new history dataset for each label and calculator"/> <param name="label" type="select" label="label - OTU Labels" multiple="true"> - <options from_dataset="dist"> - <column name="name" index="0"/> - <column name="value" index="0"/> - <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/> - <filter type="unique_value" name="unq_lbl" column="0" /> + <options> + <filter type="data_meta" ref="dist" key="labels" /> </options> </param> <param name="groups" type="select" label="groups - Groups to consider" multiple="true"> - <options from_dataset="dist"> - <column name="name" index="1"/> - <column name="value" index="1"/> - <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/> - <filter type="unique_value" name="unq_grp" column="1" /> + <options> + <filter type="data_meta" ref="dist" key="groups" /> </options> </param> </when>