diff mothur/tools/mothur/venn.xml @ 25:bfbaf823be4c

Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.

--- a/mothur/tools/mothur/venn.xml	Wed Mar 28 15:45:03 2012 -0500
+++ b/mothur/tools/mothur/venn.xml	Wed May 16 12:28:44 2012 -0500
@@ -52,19 +52,13 @@
       <option value="sharedace">Shared Ace</option>
      </param>
      <param name="label" type="select" label="label - OTU Labels" multiple="true">
-      <options from_dataset="otu">
-       <column name="name" index="0"/>
-       <column name="value" index="0"/>
-       <filter type="static_value" name="ignore_header" keep="False" column="0" value = "label"/>
-       <filter type="unique_value" name="unq_lbl" column="0" />
+      <options>
+       <filter type="data_meta" ref="otu" key="labels" />
       </options>
      </param>
      <param name="groups" type="select" label="groups - Groups to consider" multiple="true">
-      <options from_dataset="otu">
-       <column name="name" index="1"/>
-       <column name="value" index="1"/>
-       <filter type="static_value" name="ignore_header" keep="False" column="1" value = "Group"/>
-       <filter type="unique_value" name="unq_grp" column="1" />
+      <options>
+       <filter type="data_meta" ref="otu" key="groups" />
       </options>
      </param>
    </when>
@@ -79,9 +73,8 @@
       <validator type="in_range" min="5" />
      </param>
      <param name="label" type="select" label="label - OTU Labels" multiple="true">
-      <options from_dataset="otu">
-       <column name="name" index="0"/>
-       <column name="value" index="0"/>
+      <options>
+       <filter type="data_meta" ref="otu" key="labels" />
       </options>
      </param>
    </when>