diff mothur/tools/mothur/chop.seqs.xml @ 2:e990ac8a0f58

Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository

--- a/mothur/tools/mothur/chop.seqs.xml	Tue Jun 07 17:35:35 2011 -0400
+++ b/mothur/tools/mothur/chop.seqs.xml	Tue Jun 07 17:39:06 2011 -0400
@@ -1,4 +1,4 @@
-<tool id="mothur_chop_seqs" name="Chop.seqs" version="1.16.0">
+<tool id="mothur_chop_seqs" name="Chop.seqs" version="1.19.0">
  <description>Trim sequences to a specified length</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -12,7 +12,7 @@
   $short
  </command>
  <inputs>
-  <param name="fasta" type="data" format="fasta" label="fasta - Dataset"/>
+  <param name="fasta" type="data" format="fasta,align" label="fasta - Sequences to be chopped"/>
   <param name="numbases" type="integer" value="10" label="numbases - Number of bases to keep"/>
   <param name="keep" type="select" label="keep - Part of the sequence to keep">
    <option value="front">front</option>
@@ -23,7 +23,7 @@
  </inputs>
  <outputs>
   <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
-  <data format="fasta" name="out_fasta" label="${tool.name} on ${on_string}: chop.fasta" />
+  <data format_source="fasta" name="out_fasta" label="${tool.name} on ${on_string}: chop.fasta" />
  </outputs>
  <requirements>
   <requirement type="binary">mothur</requirement>
@@ -41,7 +41,7 @@
 
 **Command Documenation**
 
-The chop.seqs_ command reads a fasta file and outputs a .chop.fasta containing the trimmed sequences. It works on both aligned and unaligned sequences.
+The chop.seqs_ command reads a fasta file of sequences and outputs a .chop.fasta file containing the trimmed sequences. It works on both aligned and unaligned sequences.
 
 .. _chop.seqs: http://www.mothur.org/wiki/Chop.seqs