diff mothur/tools/mothur/list.seqs.xml @ 2:e990ac8a0f58

Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository

--- a/mothur/tools/mothur/list.seqs.xml	Tue Jun 07 17:35:35 2011 -0400
+++ b/mothur/tools/mothur/list.seqs.xml	Tue Jun 07 17:39:06 2011 -0400
@@ -1,5 +1,5 @@
-<tool id="mothur_list_seqs" name="List.seqs" version="1.16.0">
- <description>Lists the names of the sequences</description>
+<tool id="mothur_list_seqs" name="List.seqs" version="1.19.0">
+ <description>Lists the names (accnos) of the sequences</description>
  <command interpreter="python">
   mothur_wrapper.py 
   --cmd='list.seqs'
@@ -9,7 +9,7 @@
    --fasta=$search.input
   #elif $search.type == "name":
    --name=$search.input
-  #else if search.type == "group":
+  #else if $search.type == "group":
    --group=$search.input
   #elif $search.type == "alignreport":
    --alignreport=$search.input
@@ -45,7 +45,7 @@
     <param name="input" type="data" format="list" label="list - OTU List"/>
    </when>
    <when value="taxonomy">
-    <param name="input" type="data" format="taxonomy" label="taxonomy - Sequence Taxonomy"/>
+    <param name="input" type="data" format="seq.taxonomy" label="taxonomy - Sequence Taxonomy"/>
    </when>
   </conditional>
  </inputs>
@@ -70,8 +70,13 @@
 
 **Command Documenation**
 
-The list.seqs_ command writes out the names of the sequences found within a fasta, name, group, list, or align.report file.
+The list.seqs_ command writes out the names of the sequences found within a fasta, name_, group_, list_, align.report_ or taxonomy_ file.
 
+.. _name: http://www.mothur.org/wiki/Name_file
+.. _group: http://www.mothur.org/wiki/Group_file
+.. _list: http://www.mothur.org/wiki/List_file
+.. _align.report: http://www.mothur.org/wiki/Align.seqs
+.. _taxonomy: http://www.mothur.org/wiki/Taxonomy_outline
 .. _list.seqs: http://www.mothur.org/wiki/list.seqs