Mercurial > repos > jjohnson > mothur_toolsuite
diff mothur/README @ 1:fcc0778f6987
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
author | jjohnson |
---|---|
date | Tue, 07 Jun 2011 17:35:35 -0400 (2011-06-07) |
parents | 3202a38e44d9 |
children | e990ac8a0f58 |
line wrap: on
line diff
--- a/mothur/README Tue Jun 07 17:32:23 2011 -0400 +++ b/mothur/README Tue Jun 07 17:35:35 2011 -0400 @@ -1,6 +1,6 @@ Provides galaxy tools for the Mothur metagenomics package - http://www.mothur.org/wiki/Main_Page -Install mothur v.1.15.0 on your galaxy system so galaxy can execute the mothur command +Install mothur v.1.16.0 on your galaxy system so galaxy can execute the mothur command http://www.mothur.org/wiki/Download_mothur http://www.mothur.org/wiki/Installation ( This Galaxy iMothur wrapper will invoke Mothur in command line mode: http://www.mothur.org/wiki/Command_line_mode ) @@ -132,7 +132,12 @@ <tool file="mothur/make.group.xml"/> <tool file="mothur/get.groups.xml"/> <tool file="mothur/remove.groups.xml"/> + <tool file="mothur/merge.groups.xml"/> + <tool file="mothur/make.design.xml"/> + <tool file="mothur/sub.sample.xml"/> <label text="Mothur Sequence Analysis" id="mothur_sequence_analysis"/> + <tool file="mothur/sffinfo.xml"/> + <tool file="mothur/fastq.info.xml"/> <tool file="mothur/summary.seqs.xml"/> <tool file="mothur/reverse.seqs.xml"/> <tool file="mothur/list.seqs.xml"/> @@ -146,38 +151,40 @@ <tool file="mothur/filter.seqs.xml"/> <tool file="mothur/degap.seqs.xml"/> <tool file="mothur/consensus.seqs.xml"/> - <tool file="mothur/sub.sample.xml"/> + <tool file="mothur/align.seqs.xml"/> + <tool file="mothur/align.check.xml"/> + <tool file="mothur/dist.seqs.xml"/> + <tool file="mothur/pairwise.seqs.xml"/> + <tool file="mothur/split.abund.xml"/> + <tool file="mothur/split.groups.xml"/> + <tool file="mothur/pcoa.xml"/> + <tool file="mothur/pca.xml"/> + <tool file="mothur/nmds.xml"/> + <tool file="mothur/corr.axes.xml"/> + <tool file="mothur/classify.seqs.xml"/> + <label text="Mothur Sequence Chimera Detection" id="mothur_sequence_chimera"/> <tool file="mothur/chimera.bellerophon.xml"/> <tool file="mothur/chimera.ccode.xml"/> <tool file="mothur/chimera.check.xml"/> <tool file="mothur/chimera.pintail.xml"/> <tool file="mothur/chimera.slayer.xml"/> - <tool file="mothur/align.seqs.xml"/> - <tool file="mothur/align.check.xml"/> - <tool file="mothur/split.abund.xml"/> - <tool file="mothur/split.groups.xml"/> - <tool file="mothur/parse.list.xml"/> + <label text="Mothur Operational Taxonomy Unit" id="mothur_taxonomy_unit"/> <tool file="mothur/pre.cluster.xml"/> <tool file="mothur/cluster.fragments.xml"/> - <tool file="mothur/dist.seqs.xml"/> - <tool file="mothur/pairwise.seqs.xml"/> - <tool file="mothur/bin.seqs.xml"/> - <tool file="mothur/classify.seqs.xml"/> - <tool file="mothur/sffinfo.xml"/> - <tool file="mothur/fastq.info.xml"/> - <tool file="mothur/pcoa.xml"/> - <tool file="mothur/get.lineage.xml"/> - <tool file="mothur/remove.lineage.xml"/> - <label text="Mothur Operational Taxonomy Unit" id="mothur_taxonomy_unit"/> <tool file="mothur/cluster.xml"/> <tool file="mothur/hcluster.xml"/> <tool file="mothur/cluster.classic.xml"/> + <tool file="mothur/cluster.split.xml"/> + <tool file="mothur/metastats.xml"/> <tool file="mothur/read.otu.xml"/> <tool file="mothur/classify.otu.xml"/> + <tool file="mothur/parse.list.xml"/> <tool file="mothur/get.otus.xml"/> <tool file="mothur/remove.otus.xml"/> + <tool file="mothur/remove.rare.xml"/> <tool file="mothur/get.oturep.xml"/> <tool file="mothur/get.relabund.xml"/> + <tool file="mothur/get.group.xml"/> <label text="Mothur Single Sample Analysis" id="mothur_single_sample_analysis"/> <tool file="mothur/collect.single.xml"/> <tool file="mothur/rarefaction.single.xml"/> @@ -199,6 +206,8 @@ <tool file="mothur/unifrac.unweighted.xml"/> <tool file="mothur/libshuff.xml"/> <label text="Mothur Phylotype Analysis" id="mothur_phylotype_analysis"/> + <tool file="mothur/get.lineage.xml"/> + <tool file="mothur/remove.lineage.xml"/> <tool file="mothur/phylotype.xml"/> <tool file="mothur/phylo.diversity.xml"/> <tool file="mothur/clearcut.xml"/>