diff mothur/tools/mothur/indicator.xml @ 1:fcc0778f6987

Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository

--- a/mothur/tools/mothur/indicator.xml	Tue Jun 07 17:32:23 2011 -0400
+++ b/mothur/tools/mothur/indicator.xml	Tue Jun 07 17:35:35 2011 -0400
@@ -1,4 +1,4 @@
-<tool id="mothur_indicator" name="Indicator" version="1.15.0">
+<tool id="mothur_indicator" name="Indicator" version="1.16.0">
  <description>Identify indicator "species" for nodes on a tree</description>
  <command interpreter="python">
   mothur_wrapper.py 
@@ -18,6 +18,9 @@
   #if $groups.__str__ != "None" and len($groups.__str__) > 0:
    --groups=$groups
   #end if
+  #if $design.__str__ != "None" and len($design.__str__) > 0:
+   --design=$design
+  #end if
   --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.indicator.tre$:'$tree_out,'^\S+\.indicator.summary$:'$summary
  </command>
  <inputs>
@@ -37,6 +40,8 @@
     <filter type="unique_value" name="unq_grp" column="1" />
    </options>
   </param>
+  <param name="design" type="data" format="tabular" optional="true" label="design - assign groups to new grouping"
+         help="design has 2 columns: group(col 1) and grouping(col 2) (separated by a TAB character)"/>
  </inputs>
  <outputs>
   <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />