Mercurial > repos > jjohnson > mothur_toolsuite
view mothur/datatypes_conf.xml @ 36:040410b8167e default tip
Fixed reference to legacy blast repository in tool_dependencies.xml. Updated README with author information.
author | galaxyuser <galaxy_user@agr.g.ca> |
---|---|
date | Mon, 10 Nov 2014 15:40:02 -0500 |
parents | 95d75b35e4d2 |
children |
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<?xml version="1.0"?> <datatypes> <datatype_files> <datatype_file name="metagenomics.py"/> </datatype_files> <registration> <!-- Start Mothur Datatypes --> <datatype extension="otu" type="galaxy.datatypes.metagenomics:Otu" display_in_upload="true"/> <datatype extension="list" type="galaxy.datatypes.metagenomics:OtuList" display_in_upload="true"/> <datatype extension="sabund" type="galaxy.datatypes.metagenomics:Sabund" display_in_upload="true"/> <datatype extension="rabund" type="galaxy.datatypes.metagenomics:Rabund" display_in_upload="true"/> <datatype extension="shared" type="galaxy.datatypes.metagenomics:SharedRabund" display_in_upload="true"/> <datatype extension="relabund" type="galaxy.datatypes.metagenomics:RelAbund" display_in_upload="true"/> <datatype extension="names" type="galaxy.datatypes.metagenomics:Names" display_in_upload="true"/> <datatype extension="design" type="galaxy.datatypes.metagenomics:Design" display_in_upload="true"/> <!-- <datatype extension="group.metadata" type="galaxy.datatypes.metagenomics:GroupMetadata" display_in_upload="true"/> --> <datatype extension="summary" type="galaxy.datatypes.metagenomics:Summary" display_in_upload="true"/> <datatype extension="groups" type="galaxy.datatypes.metagenomics:Group" display_in_upload="true"/> <datatype extension="oligos" type="galaxy.datatypes.metagenomics:Oligos" display_in_upload="true"/> <datatype extension="align" type="galaxy.datatypes.metagenomics:SequenceAlignment" display_in_upload="true"/> <datatype extension="accnos" type="galaxy.datatypes.metagenomics:AccNos" display_in_upload="true"/> <datatype extension="otulabels" type="galaxy.datatypes.metagenomics:AccNos" display_in_upload="true"/> <datatype extension="otu.corr" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true"/> <datatype extension="map" type="galaxy.datatypes.metagenomics:SecondaryStructureMap" display_in_upload="true"/> <datatype extension="align.check" type="galaxy.datatypes.metagenomics:AlignCheck" display_in_upload="true"/> <datatype extension="align.report" type="galaxy.datatypes.metagenomics:AlignReport" display_in_upload="true"/> <datatype extension="filter" type="galaxy.datatypes.metagenomics:LaneMask" display_in_upload="true"/> <datatype extension="dist" type="galaxy.datatypes.metagenomics:DistanceMatrix" display_in_upload="true"/> <datatype extension="pair.dist" type="galaxy.datatypes.metagenomics:PairwiseDistanceMatrix" display_in_upload="true"/> <datatype extension="square.dist" type="galaxy.datatypes.metagenomics:SquareDistanceMatrix" display_in_upload="true"/> <datatype extension="lower.dist" type="galaxy.datatypes.metagenomics:LowerTriangleDistanceMatrix" display_in_upload="true"/> <datatype extension="ref.taxonomy" type="galaxy.datatypes.metagenomics:RefTaxonomy" display_in_upload="true"> <converter file="ref_to_seq_taxonomy_converter.xml" target_datatype="seq.taxonomy"/> </datatype> <datatype extension="seq.taxonomy" type="galaxy.datatypes.metagenomics:SequenceTaxonomy" display_in_upload="true"/> <datatype extension="rdp.taxonomy" type="galaxy.datatypes.metagenomics:RDPSequenceTaxonomy" display_in_upload="true"/> <datatype extension="cons.taxonomy" type="galaxy.datatypes.metagenomics:ConsensusTaxonomy" display_in_upload="true"/> <datatype extension="tax.summary" type="galaxy.datatypes.metagenomics:TaxonomySummary" display_in_upload="true"/> <datatype extension="freq" type="galaxy.datatypes.metagenomics:Frequency" display_in_upload="true"/> <datatype extension="quan" type="galaxy.datatypes.metagenomics:Quantile" display_in_upload="true"/> <datatype extension="filtered.quan" type="galaxy.datatypes.metagenomics:FilteredQuantile" display_in_upload="true"/> <datatype extension="masked.quan" type="galaxy.datatypes.metagenomics:MaskedQuantile" display_in_upload="true"/> <datatype extension="filtered.masked.quan" type="galaxy.datatypes.metagenomics:FilteredMaskedQuantile" display_in_upload="true"/> <datatype extension="axes" type="galaxy.datatypes.metagenomics:Axes" display_in_upload="true"/> <datatype extension="tre" type="galaxy.datatypes.data:Newick" display_in_upload="true"/> <datatype extension="sff.flow" type="galaxy.datatypes.metagenomics:SffFlow" display_in_upload="true"/> <datatype extension="biom" type="galaxy.datatypes.metagenomics:BiologicalObservationMatrix" display_in_upload="true"/> <datatype extension="nhx" type="galaxy.datatypes.metagenomics:Nhx" display_in_upload="true"/> <datatype extension="nex" type="galaxy.datatypes.metagenomics:Nexus" display_in_upload="true"/> <datatype extension="count_table" type="galaxy.datatypes.metagenomics:CountTable" display_in_upload="true"/> <datatype extension="otu_map" type="galaxy.datatypes.metagenomics:OtuMap" display_in_upload="true"/> <datatype extension="metadata" type="galaxy.datatypes.metagenomics:Metadata" display_in_upload="true"/> <!-- End Mothur Datatypes --> <!-- Start Qiime Datatypes --> <datatype extension="qiimemapping" type="galaxy.datatypes.metagenomics:QiimeMetadataMapping" display_in_upload="true"/> <datatype extension="qiimeotu" type="galaxy.datatypes.metagenomics:QiimeOTU" display_in_upload="true"/> <datatype extension="qiimeotutable" type="galaxy.datatypes.metagenomics:QiimeOTUTable" display_in_upload="true"/> <datatype extension="qiimedistmat" type="galaxy.datatypes.metagenomics:QiimeDistanceMatrix" display_in_upload="true"/> <datatype extension="qiimetaxsummary" type="galaxy.datatypes.metagenomics:QiimeTaxaSummary" display_in_upload="true"/> <datatype extension="qiimepca" type="galaxy.datatypes.metagenomics:QiimePCA" display_in_upload="true"/> <datatype extension="qiimeparams" type="galaxy.datatypes.metagenomics:QiimeParams" display_in_upload="true"/> <datatype extension="qiimeprefs" type="galaxy.datatypes.metagenomics:QiimePrefs" display_in_upload="true"/> <!-- End Qiime Datatypes --> </registration> <sniffers> <sniffer type="galaxy.datatypes.metagenomics:Otu"/> <sniffer type="galaxy.datatypes.metagenomics:Sabund"/> <sniffer type="galaxy.datatypes.metagenomics:GroupAbund"/> <sniffer type="galaxy.datatypes.metagenomics:SharedRabund"/> <sniffer type="galaxy.datatypes.metagenomics:RelAbund"/> <sniffer type="galaxy.datatypes.metagenomics:SecondaryStructureMap"/> <sniffer type="galaxy.datatypes.metagenomics:SequenceAlignment"/> <sniffer type="galaxy.datatypes.metagenomics:LowerTriangleDistanceMatrix"/> <sniffer type="galaxy.datatypes.metagenomics:SquareDistanceMatrix"/> <sniffer type="galaxy.datatypes.metagenomics:PairwiseDistanceMatrix"/> <sniffer type="galaxy.datatypes.metagenomics:Oligos"/> <sniffer type="galaxy.datatypes.metagenomics:Frequency"/> <sniffer type="galaxy.datatypes.metagenomics:OtuMap"/> <sniffer type="galaxy.datatypes.metagenomics:Metadata"/> <sniffer type="galaxy.datatypes.metagenomics:Quantile"/> <sniffer type="galaxy.datatypes.metagenomics:LaneMask"/> <sniffer type="galaxy.datatypes.metagenomics:RefTaxonomy"/> <sniffer type="galaxy.datatypes.metagenomics:SequenceTaxonomy"/> <sniffer type="galaxy.datatypes.metagenomics:RDPSequenceTaxonomy"/> <sniffer type="galaxy.datatypes.metagenomics:Phylip"/> <sniffer type="galaxy.datatypes.metagenomics:Axes"/> <sniffer type="galaxy.datatypes.metagenomics:Newick"/> <sniffer type="galaxy.datatypes.metagenomics:Nexus"/> <sniffer type="galaxy.datatypes.metagenomics:BiologicalObservationMatrix"/> <sniffer type="galaxy.datatypes.metagenomics:QiimeMetadataMapping"/> </sniffers> </datatypes>