Mercurial > repos > jjohnson > mothur_toolsuite
view mothur/tools/mothur/unique.seqs.xml @ 0:3202a38e44d9
Migrated tool version 1.15.1 from old tool shed archive to new tool shed repository
author | jjohnson |
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date | Tue, 07 Jun 2011 17:32:23 -0400 |
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children | fcc0778f6987 |
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<tool id="mothur_unique_seqs" name="Unique.seqs" version="1.15.0"> <description>Return unique sequences</description> <command interpreter="python"> mothur_wrapper.py --cmd='unique.seqs' --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.unique\.\w+$:'$out_fasta,'^\S+\.names$:'$out_names --outputdir='$logfile.extra_files_path' --fasta=$fasta --name=$names </command> <inputs> <param name="fasta" type="data" format="fasta" label="fasta - Sequences to filter"/> <param name="names" type="data" format="names" optional="true" label="names - Sequences Names"/> </inputs> <outputs> <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> <data format="fasta" name="out_fasta" label="${tool.name} on ${on_string}: fasta" /> <data format="names" name="out_names" label="${tool.name} on ${on_string}: names" /> </outputs> <requirements> <requirement type="binary">mothur</requirement> </requirements> <tests> </tests> <help> **Mothur Overview** Mothur_, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan, provides bioinformatics for the microbial ecology community. .. _Mothur: http://www.mothur.org/wiki/Main_Page **Command Documenation** The unique.seqs_ command returns only the unique sequences found in a fasta-formatted sequence file and a file that indicates those sequences that are identical to the reference sequence. .. _unique.seqs: http://www.mothur.org/wiki/Unique.seqs </help> </tool>