Mercurial > repos > jjohnson > mothur_toolsuite
view mothur/tools/mothur/summary.qual.xml @ 22:ed906f8149bb
Mothur - html escape amperand in calculator option label
author | Jim Johnson <jj@umn.edu> |
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date | Thu, 19 Jan 2012 10:34:04 -0600 |
parents | 697156806162 |
children | 49058b1f8d3f |
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<tool id="mothur_summary_qual" name="Summary.qual" version="1.23.0"> <description>Summarize the quality scores</description> <command interpreter="python"> mothur_wrapper.py --cmd='summary.qual' --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.summary$:'$out_summary --outputdir='$logfile.extra_files_path' --qfile=$qfile #if $name.__str__ != "None" and len($name.__str__) > 0: --name=$name #end if ## --processors=8 </command> <inputs> <param name="qfile" type="data" format="qual" label="qfile - Sequence Quality file"/> <param name="name" type="data" format="names" optional="true" label="name - Names"/> </inputs> <outputs> <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> <data format="summary" name="out_summary" label="${tool.name} on ${on_string}: summary" /> </outputs> <requirements> <requirement type="binary">mothur</requirement> </requirements> <tests> </tests> <help> **Mothur Overview** Mothur_, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan, provides bioinformatics for the microbial ecology community. .. _Mothur: http://www.mothur.org/wiki/Main_Page **Command Documenation** The summary.qual_ command reads a quality file and an optional name, and summarizes the quality information. .. _summary.qual: http://www.mothur.org/wiki/Summary.qual </help> </tool>