Mercurial > repos > jjohnson > mothur_toolsuite
view mothur/tools/mothur/summary.seqs.xml @ 1:fcc0778f6987
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
author | jjohnson |
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date | Tue, 07 Jun 2011 17:35:35 -0400 |
parents | 3202a38e44d9 |
children | e990ac8a0f58 |
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<tool id="mothur_summary_seqs" name="Summary.seqs" version="1.16.0"> <description>Summarize the quality of sequences</description> <command interpreter="python"> mothur_wrapper.py --cmd='summary.seqs' --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.summary$:'$out_summary --outputdir='$logfile.extra_files_path' --fasta=$fasta </command> <inputs> <param name="fasta" type="data" format="fasta,align" label="fasta - Dataset"/> </inputs> <outputs> <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> <data format="summary" name="out_summary" label="${tool.name} on ${on_string}: summary" /> </outputs> <requirements> <requirement type="binary">mothur</requirement> </requirements> <tests> </tests> <help> **Mothur Overview** Mothur_, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan, provides bioinformatics for the microbial ecology community. .. _Mothur: http://www.mothur.org/wiki/Main_Page **Command Documenation** The summary.seqs_ command will summarize the quality of sequences in an unaligned or aligned fasta-formatted sequence file. .. _summary.seqs: http://www.mothur.org/wiki/Summary.seqs </help> </tool>