# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1310145226 18000
# Node ID 9181ff21b48ab8c760cfcbd642d14916f92e2a0c
# Parent  3249eb52a9c1084d180879eab99c78bf9194aa53
Add name param to classify.otu

diff -r 3249eb52a9c1 -r 9181ff21b48a mothur/tools/mothur/classify.otu.xml
--- a/mothur/tools/mothur/classify.otu.xml	Tue Jul 05 13:07:40 2011 -0500
+++ b/mothur/tools/mothur/classify.otu.xml	Fri Jul 08 12:13:46 2011 -0500
@@ -9,6 +9,9 @@
   --new_datasets='^\S+?\.(unique|[0-9.]*\.cons\.taxonomy)$:cons.taxonomy','^\S+?\.(unique|[0-9.]*\.cons\.tax\.summary)$:tax.summary'
   --list=$otu
   --taxonomy=$tax.taxonomy
+  #if $name.__str__ != "None" and len($name.__str__) > 0:
+   --name='$name'
+  #end if
   #if $reftax.source != 'none' and len($reftax.taxonomy.__str__) > 0:
    --reftaxonomy=$reftax.taxonomy
   #end if
@@ -26,6 +29,7 @@
  </command>
  <inputs>
   <param name="otu" type="data" format="list" label="list - OTU List "/>
+  <param name="name" type="data" format="names" optional="true" label="name - taxonomy sequence names"/>
   <conditional name="tax">
    <param name="source" type="select" label="Select Taxonomy from" help="">
     <option value="hist">History</option>