Mercurial > repos > jjohnson > netmhc
comparison README @ 0:bb25a4e5f211 draft default tip
"planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/netmhc commit 3bf9a39fe11622806ac6b032ba4fc6139a003580"
| author | jjohnson |
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| date | Tue, 18 Feb 2020 14:48:51 -0500 |
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| -1:000000000000 | 0:bb25a4e5f211 |
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| 1 NetMHC 4.0 server predicts binding of peptides to a number of different HLA alleles using artificial neural networks (ANNs). | |
| 2 | |
| 3 SEE: http://www.cbs.dtu.dk/services/NetMHC/ | |
| 4 | |
| 5 NetMHC is available to academic researchers. | |
| 6 The download webpage requires the user to accept a academic license aggrement, which prevents automatic Galaxy package installation. | |
| 7 http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?netMHC | |
| 8 | |
| 9 | |
| 10 Download NetMHC 4.0 and install as described in: netMHC-4.0.readme | |
| 11 ( Be sure to do step 3 which installs the data from: http://www.cbs.dtu.dk/services/NetMHC-4.0/data.tar.gz ) | |
| 12 | |
| 13 | |
| 14 For Galaxy installation : | |
| 15 | |
| 16 Add tool_depedencies/netMHC/4.0/env.sh | |
| 17 | |
| 18 The env.sh must define ENVIROMENT variables: NMHOME and TMPDIR | |
| 19 | |
| 20 For example, if you installed netMHC at: /home/galaxy/src/netMHC-4.0 | |
| 21 | |
| 22 galaxy@galaxy [/home/galaxy] % cat tool_dependencies/netMHC/4.0/env.sh | |
| 23 export NMHOME=/home/galaxy/src/netMHC-4.0 | |
| 24 export TMPDIR=/tmp | |
| 25 export PATH=/home/galaxy/src/netMHC-4.0:$PATH | |
| 26 |