optitype: nohup.out annotate

annotate nohup.out @ 2:bf36e0afdfb4 draft default tip

"planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty"

author	jjohnson
date	Tue, 09 Feb 2021 15:41:49 +0000
parents
children

rev	line source
2 bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1 git --git-dir /Users/jj/.planemo/gx_repo config remote.origin.fetch '+refs/:refs/'
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	2 git --git-dir /Users/jj/.planemo/gx_repo config remote.origin.mirror true
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	3 git --git-dir /Users/jj/.planemo/gx_repo remote update >/dev/null 2>&1
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	4 galaxy.tool_util.deps.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	5 git clone --branch master /Users/jj/.planemo/gx_repo /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	6 Cloning into '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev'...
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	7 done.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	8 Checking out files: 78% (3927/4988) Checking out files: 79% (3941/4988) Checking out files: 80% (3991/4988) Checking out files: 81% (4041/4988) Checking out files: 82% (4091/4988) Checking out files: 83% (4141/4988) Checking out files: 84% (4190/4988) Checking out files: 85% (4240/4988) Checking out files: 86% (4290/4988) Checking out files: 87% (4340/4988) Checking out files: 88% (4390/4988) Checking out files: 89% (4440/4988) Checking out files: 90% (4490/4988) Checking out files: 91% (4540/4988) Checking out files: 92% (4589/4988) Checking out files: 93% (4639/4988) Checking out files: 94% (4689/4988) Checking out files: 95% (4739/4988) Checking out files: 96% (4789/4988) Checking out files: 97% (4839/4988) Checking out files: 98% (4889/4988) Checking out files: 99% (4939/4988) Checking out files: 100% (4988/4988) Checking out files: 100% (4988/4988), done.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	9 if [ -d .venv ] \|\| [ -f dist-eggs.ini ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/Users/jj/.planemo/gx_venv; fi && export GALAXY_VIRTUAL_ENV && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /Users/jj/.planemo/gx_venv/bin/virtualenv -p /Users/jj/.planemo/gx_venv/bin/python2.7 $GALAXY_VIRTUAL_ENV; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; fi && COMMON_STARTUP_ARGS=; $(grep -q 'skip-venv' run_tests.sh) && COMMON_STARTUP_ARGS="--dev-wheels"; export COMMON_STARTUP_ARGS; echo "Set COMMON_STARTUP_ARGS to ${COMMON_STARTUP_ARGS}" && ./scripts/common_startup.sh ${COMMON_STARTUP_ARGS}
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	10 galaxy.tool_util.deps.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	11 Set COMMON_STARTUP_ARGS to --dev-wheels
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	12 Initializing tool-data/shared/ucsc/builds.txt from builds.txt.sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	13 Initializing tool-data/shared/ucsc/manual_builds.txt from manual_builds.txt.sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	14 Initializing static/welcome.html from welcome.html.sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	15 Unsetting $PYTHONPATH
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	16 Activating virtualenv at /Users/jj/.planemo/gx_venv
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	17 Galaxy support for Python 2.7 is deprecated, please consider moving to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	18 Python >= 3.5 .
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	19 https://docs.galaxyproject.org/en/latest/admin/python.html contains instructions
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	20 on how to force Galaxy to use a different version.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	21 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	22 Requirement already satisfied: pip>=8.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (20.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	23 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	24 Ignoring pyinotify: markers 'sys_platform != "win32" and sys_platform != "darwin" and sys_platform != "sunos5"' don't match your environment
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	25 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	26 Requirement already satisfied: adal==1.2.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 3)) (1.2.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	27 Requirement already satisfied: amqp==2.5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 4)) (2.5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	28 Requirement already satisfied: appdirs==1.4.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 5)) (1.4.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	29 Requirement already satisfied: attrs==19.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 6)) (19.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	30 Requirement already satisfied: azure-common==1.1.14 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 7)) (1.1.14)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	31 Requirement already satisfied: azure-cosmosdb-nspkg==2.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 8)) (2.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	32 Requirement already satisfied: azure-cosmosdb-table==1.0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 9)) (1.0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	33 Requirement already satisfied: azure-mgmt-compute==4.0.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 10)) (4.0.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	34 Requirement already satisfied: azure-mgmt-devtestlabs==2.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 11)) (2.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	35 Requirement already satisfied: azure-mgmt-network==2.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 12)) (2.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	36 Requirement already satisfied: azure-mgmt-nspkg==3.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 13)) (3.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	37 Requirement already satisfied: azure-mgmt-resource==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 14)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	38 Requirement already satisfied: azure-mgmt-storage==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 15)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	39 Requirement already satisfied: azure-nspkg==3.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 16)) (3.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	40 Requirement already satisfied: azure-storage-blob==1.3.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 17)) (1.3.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	41 Requirement already satisfied: azure-storage-common==1.4.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 18)) (1.4.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	42 Requirement already satisfied: azure-storage-nspkg==3.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 19)) (3.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	43 Requirement already satisfied: babel==2.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 20)) (2.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	44 Requirement already satisfied: bagit==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 21)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	45 Requirement already satisfied: bcrypt==3.1.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 22)) (3.1.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	46 Requirement already satisfied: bdbag==1.5.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 23)) (1.5.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	47 Requirement already satisfied: beaker==1.11.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 24)) (1.11.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	48 Requirement already satisfied: bioblend==0.13.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 25)) (0.13.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	49 Requirement already satisfied: bleach==3.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 26)) (3.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	50 Requirement already satisfied: boltons==19.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 27)) (19.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	51 Requirement already satisfied: boto3==1.9.114 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 28)) (1.9.114)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	52 Requirement already satisfied: boto==2.49.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 29)) (2.49.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	53 Requirement already satisfied: botocore==1.12.253 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 30)) (1.12.253)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	54 Requirement already satisfied: bx-python==0.8.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 31)) (0.8.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	55 Requirement already satisfied: bz2file==0.98 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 32)) (0.98)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	56 Requirement already satisfied: cachecontrol==0.11.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 33)) (0.11.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	57 Requirement already satisfied: cachetools==3.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 34)) (3.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	58 Requirement already satisfied: certifi==2019.11.28 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 35)) (2019.11.28)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	59 Requirement already satisfied: cffi==1.13.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 36)) (1.13.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	60 Requirement already satisfied: chardet==3.0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 37)) (3.0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	61 Requirement already satisfied: cheetah3==3.2.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 38)) (3.2.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	62 Requirement already satisfied: cliff==2.16.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 39)) (2.16.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	63 Requirement already satisfied: cloudauthz==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 40)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	64 Requirement already satisfied: cloudbridge==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 41)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	65 Requirement already satisfied: cmd2==0.8.9 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 42)) (0.8.9)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	66 Requirement already satisfied: coloredlogs==10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 43)) (10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	67 Requirement already satisfied: configparser==4.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 44)) (4.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	68 Requirement already satisfied: contextlib2==0.6.0.post1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 45)) (0.6.0.post1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	69 Requirement already satisfied: cryptography==2.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 46)) (2.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	70 Requirement already satisfied: cwltool==1.0.20191225192155 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 47)) (1.0.20191225192155)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	71 Requirement already satisfied: debtcollector==1.22.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 48)) (1.22.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	72 Requirement already satisfied: decorator==4.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 49)) (4.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	73 Requirement already satisfied: deprecated==1.2.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 50)) (1.2.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	74 Requirement already satisfied: deprecation==2.0.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 51)) (2.0.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	75 Requirement already satisfied: dictobj==0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 52)) (0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	76 Requirement already satisfied: docopt==0.6.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 53)) (0.6.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	77 Requirement already satisfied: docutils==0.15.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 54)) (0.15.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	78 Requirement already satisfied: dogpile.cache==0.9.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 55)) (0.9.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	79 Requirement already satisfied: ecdsa==0.14.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 56)) (0.14.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	80 Requirement already satisfied: enum34==1.1.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 57)) (1.1.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	81 Requirement already satisfied: fabric3==1.14.post1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 58)) (1.14.post1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	82 Requirement already satisfied: funcsigs==1.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 59)) (1.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	83 Requirement already satisfied: functools32==3.2.3.post2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 60)) (3.2.3.post2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	84 Requirement already satisfied: future==0.18.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 61)) (0.18.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	85 Requirement already satisfied: futures==3.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 62)) (3.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	86 Requirement already satisfied: galaxy-sequence-utils==1.1.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 63)) (1.1.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	87 Requirement already satisfied: google-api-python-client==1.7.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 64)) (1.7.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	88 Requirement already satisfied: google-auth-httplib2==0.0.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 65)) (0.0.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	89 Requirement already satisfied: google-auth==1.7.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 66)) (1.7.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	90 Requirement already satisfied: gxformat2==0.10.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 67)) (0.10.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	91 Requirement already satisfied: h5py==2.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 68)) (2.10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	92 Requirement already satisfied: httplib2==0.15.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 69)) (0.15.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	93 Requirement already satisfied: humanfriendly==4.18 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 70)) (4.18)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	94 Requirement already satisfied: idna==2.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 71)) (2.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	95 Requirement already satisfied: importlib-metadata==1.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 72)) (1.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	96 Requirement already satisfied: ipaddress==1.0.23 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 73)) (1.0.23)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	97 Requirement already satisfied: isa-rwval==0.10.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 74)) (0.10.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	98 Requirement already satisfied: iso8601==0.1.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 75)) (0.1.12)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	99 Requirement already satisfied: isodate==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 76)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	100 Requirement already satisfied: jmespath==0.9.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 77)) (0.9.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	101 Requirement already satisfied: jsonpatch==1.24 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 78)) (1.24)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	102 Requirement already satisfied: jsonpointer==2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 79)) (2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	103 Requirement already satisfied: jsonschema==3.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 80)) (3.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	104 Requirement already satisfied: keystoneauth1==3.18.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 81)) (3.18.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	105 Requirement already satisfied: kombu==4.6.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 82)) (4.6.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	106 Requirement already satisfied: lockfile==0.12.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 83)) (0.12.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	107 Requirement already satisfied: lxml==4.4.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 84)) (4.4.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	108 Requirement already satisfied: mako==1.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 85)) (1.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	109 Requirement already satisfied: markdown==3.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 86)) (3.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	110 Requirement already satisfied: markupsafe==1.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 87)) (1.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	111 Requirement already satisfied: mercurial==5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 88)) (5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	112 Requirement already satisfied: mistune==0.8.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 89)) (0.8.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	113 Requirement already satisfied: monotonic==1.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 90)) (1.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	114 Requirement already satisfied: more-itertools==5.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 91)) (5.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	115 Requirement already satisfied: msgpack==0.6.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 92)) (0.6.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	116 Requirement already satisfied: msrest==0.5.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 93)) (0.5.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	117 Requirement already satisfied: msrestazure==0.5.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 94)) (0.5.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	118 Requirement already satisfied: munch==2.5.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 95)) (2.5.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	119 Requirement already satisfied: mypy-extensions==0.4.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 96)) (0.4.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	120 Requirement already satisfied: netaddr==0.7.19 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 97)) (0.7.19)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	121 Requirement already satisfied: netifaces==0.10.9 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 98)) (0.10.9)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	122 Requirement already satisfied: networkx==1.11 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 99)) (1.11)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	123 Requirement already satisfied: nodeenv==1.3.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 100)) (1.3.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	124 Requirement already satisfied: nose==1.3.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 101)) (1.3.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	125 Requirement already satisfied: numpy==1.16.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 102)) (1.16.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	126 Requirement already satisfied: oauth2client==4.1.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 103)) (4.1.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	127 Requirement already satisfied: oauthlib==3.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 104)) (3.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	128 Requirement already satisfied: openstacksdk==0.17.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 105)) (0.17.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	129 Requirement already satisfied: os-client-config==1.33.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 106)) (1.33.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	130 Requirement already satisfied: os-service-types==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 107)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	131 Requirement already satisfied: osc-lib==1.14.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 108)) (1.14.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	132 Requirement already satisfied: oslo.config==6.12.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 109)) (6.12.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	133 Requirement already satisfied: oslo.context==2.23.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 110)) (2.23.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	134 Requirement already satisfied: oslo.i18n==3.25.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 111)) (3.25.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	135 Requirement already satisfied: oslo.log==3.45.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 112)) (3.45.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	136 Requirement already satisfied: oslo.serialization==2.29.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 113)) (2.29.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	137 Requirement already satisfied: oslo.utils==3.42.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 114)) (3.42.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	138 Requirement already satisfied: packaging==20.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 115)) (20.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	139 Requirement already satisfied: paramiko==2.7.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 116)) (2.7.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	140 Requirement already satisfied: parsley==1.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 117)) (1.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	141 Requirement already satisfied: paste==3.2.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 118)) (3.2.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	142 Requirement already satisfied: pastedeploy==2.0.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 119)) (2.0.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	143 Requirement already satisfied: pastescript==3.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 120)) (3.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	144 Requirement already satisfied: pathlib2==2.3.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 121)) (2.3.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	145 Requirement already satisfied: pbr==5.4.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 122)) (5.4.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	146 Requirement already satisfied: prettytable==0.7.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 123)) (0.7.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	147 Requirement already satisfied: prov==1.5.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 124)) (1.5.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	148 Requirement already satisfied: psutil==5.6.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 125)) (5.6.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	149 Requirement already satisfied: pulsar-galaxy-lib==0.14.0.dev1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 126)) (0.14.0.dev1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	150 Requirement already satisfied: pyasn1-modules==0.2.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 127)) (0.2.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	151 Requirement already satisfied: pyasn1==0.4.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 128)) (0.4.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	152 Requirement already satisfied: pycparser==2.19 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 129)) (2.19)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	153 Requirement already satisfied: pycryptodome==3.9.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 130)) (3.9.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	154 Requirement already satisfied: pyeventsystem==0.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 131)) (0.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	155 Requirement already satisfied: pyjwt==1.7.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 133)) (1.7.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	156 Requirement already satisfied: pykwalify==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 134)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	157 Requirement already satisfied: pynacl==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 135)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	158 Requirement already satisfied: pyopenssl==19.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 136)) (19.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	159 Requirement already satisfied: pyparsing==2.4.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 137)) (2.4.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	160 Requirement already satisfied: pyperclip==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 138)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	161 Requirement already satisfied: pyrsistent==0.15.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 139)) (0.15.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	162 Requirement already satisfied: pysam==0.15.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 140)) (0.15.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	163 Requirement already satisfied: pysftp==0.2.9 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 141)) (0.2.9)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	164 Requirement already satisfied: python-cinderclient==4.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 142)) (4.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	165 Requirement already satisfied: python-dateutil==2.8.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 143)) (2.8.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	166 Requirement already satisfied: python-glanceclient==2.12.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 144)) (2.12.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	167 Requirement already satisfied: python-jose==3.0.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 145)) (3.0.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	168 Requirement already satisfied: python-keystoneclient==3.17.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 146)) (3.17.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	169 Requirement already satisfied: python-neutronclient==6.9.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 147)) (6.9.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	170 Requirement already satisfied: python-novaclient==11.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 148)) (11.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	171 Requirement already satisfied: python-openid==2.2.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 149)) (2.2.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	172 Requirement already satisfied: python-swiftclient==3.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 150)) (3.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	173 Requirement already satisfied: pytz==2019.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 151)) (2019.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	174 Requirement already satisfied: pyuwsgi==2.0.18.post0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 152)) (2.0.18.post0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	175 Requirement already satisfied: pyyaml==5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 153)) (5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	176 Requirement already satisfied: rdflib-jsonld==0.4.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 154)) (0.4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	177 Requirement already satisfied: rdflib==4.2.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 155)) (4.2.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	178 Requirement already satisfied: repoze.lru==0.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 156)) (0.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	179 Requirement already satisfied: requests-oauthlib==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 157)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	180 Requirement already satisfied: requests-toolbelt==0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 158)) (0.9.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	181 Requirement already satisfied: requests==2.22.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 159)) (2.22.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	182 Requirement already satisfied: requestsexceptions==1.4.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 160)) (1.4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	183 Requirement already satisfied: rfc3986==1.3.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 161)) (1.3.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	184 Requirement already satisfied: routes==2.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 162)) (2.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	185 Requirement already satisfied: rsa==4.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 163)) (4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	186 Requirement already satisfied: ruamel.ordereddict==0.4.14 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 164)) (0.4.14)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	187 Requirement already satisfied: ruamel.yaml.clib==0.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 165)) (0.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	188 Requirement already satisfied: ruamel.yaml==0.16.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 166)) (0.16.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	189 Requirement already satisfied: s3transfer==0.2.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 167)) (0.2.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	190 Requirement already satisfied: scandir==1.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 168)) (1.10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	191 Requirement already satisfied: schema-salad==4.5.20191229160203 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 169)) (4.5.20191229160203)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	192 Requirement already satisfied: setuptools-scm==3.3.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 170)) (3.3.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	193 Requirement already satisfied: shellescape==3.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 171)) (3.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	194 Requirement already satisfied: simplejson==3.17.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 172)) (3.17.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	195 Requirement already satisfied: six==1.11.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 173)) (1.11.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	196 Requirement already satisfied: social-auth-core[openidconnect]==3.1.0+gx0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 174)) (3.1.0+gx0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	197 Requirement already satisfied: sqlalchemy-migrate==0.13.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 175)) (0.13.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	198 Requirement already satisfied: sqlalchemy-utils==0.35.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 176)) (0.35.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	199 Requirement already satisfied: sqlalchemy==1.3.11 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 177)) (1.3.11)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	200 Requirement already satisfied: sqlparse==0.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 178)) (0.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	201 Requirement already satisfied: stevedore==1.31.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 179)) (1.31.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	202 Requirement already satisfied: subprocess32==3.5.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 180)) (3.5.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	203 Requirement already satisfied: svgwrite==1.3.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 181)) (1.3.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	204 Requirement already satisfied: tempita==0.5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 182)) (0.5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	205 Requirement already satisfied: tenacity==4.12.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 183)) (4.12.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	206 Requirement already satisfied: typing-extensions==3.7.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 184)) (3.7.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	207 Requirement already satisfied: typing==3.7.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 185)) (3.7.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	208 Requirement already satisfied: tzlocal==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 186)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	209 Requirement already satisfied: unicodecsv==0.14.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 187)) (0.14.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	210 Requirement already satisfied: uritemplate==3.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 188)) (3.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	211 Requirement already satisfied: urllib3==1.25.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 189)) (1.25.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	212 Requirement already satisfied: vine==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 190)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	213 Requirement already satisfied: warlock==1.3.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 191)) (1.3.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	214 Requirement already satisfied: wcwidth==0.1.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 192)) (0.1.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	215 Requirement already satisfied: webencodings==0.5.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 193)) (0.5.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	216 Requirement already satisfied: webob==1.8.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 194)) (1.8.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	217 Requirement already satisfied: whoosh==2.7.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 195)) (2.7.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	218 Requirement already satisfied: wrapt==1.11.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 196)) (1.11.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	219 Requirement already satisfied: zipp==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 197)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	220 Requirement already satisfied: alabaster==0.7.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 3)) (0.7.12)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	221 Requirement already satisfied: argh==0.26.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 4)) (0.26.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	222 Requirement already satisfied: atomicwrites==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 5)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	223 Requirement already satisfied: commonmark==0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 10)) (0.9.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	224 Requirement already satisfied: coverage==4.5.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 13)) (4.5.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	225 Requirement already satisfied: gunicorn==19.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 18)) (19.10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	226 Requirement already satisfied: imagesize==1.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 20)) (1.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	227 Requirement already satisfied: jinja2==2.10.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 22)) (2.10.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	228 Requirement already satisfied: mirakuru==1.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 26)) (1.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	229 Requirement already satisfied: mock==3.0.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 27)) (3.0.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	230 Requirement already satisfied: nosehtml==0.4.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 30)) (0.4.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	231 Requirement already satisfied: pathtools==0.1.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 33)) (0.1.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	232 Requirement already satisfied: pluggy==0.13.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 34)) (0.13.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	233 Requirement already satisfied: port-for==0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 35)) (0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	234 Requirement already satisfied: py==1.8.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 37)) (1.8.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	235 Requirement already satisfied: pygithub==1.45 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 38)) (1.45)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	236 Requirement already satisfied: pygments==2.5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 39)) (2.5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	237 Requirement already satisfied: pytest-cov==2.8.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 42)) (2.8.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	238 Requirement already satisfied: pytest-html==1.22.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 43)) (1.22.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	239 Requirement already satisfied: pytest-metadata==1.8.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 44)) (1.8.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	240 Requirement already satisfied: pytest-postgresql==1.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 45)) (1.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	241 Requirement already satisfied: pytest-pythonpath==0.7.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 46)) (0.7.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	242 Requirement already satisfied: pytest==4.6.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 47)) (4.6.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	243 Requirement already satisfied: recommonmark==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 49)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	244 Requirement already satisfied: selenium==3.141.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 52)) (3.141.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	245 Requirement already satisfied: snowballstemmer==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 54)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	246 Requirement already satisfied: sphinx-markdown-tables==0.0.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 55)) (0.0.12)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	247 Requirement already satisfied: sphinx-rtd-theme==0.4.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 56)) (0.4.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	248 Requirement already satisfied: sphinx==1.8.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 57)) (1.8.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	249 Requirement already satisfied: sphinxcontrib-websupport==1.1.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 58)) (1.1.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	250 Requirement already satisfied: testfixtures==6.10.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 59)) (6.10.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	251 Requirement already satisfied: twill==0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 60)) (0.9.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	252 Requirement already satisfied: watchdog==0.9.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 63)) (0.9.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	253 Requirement already satisfied: setuptools in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from cwltool==1.0.20191225192155->-r requirements.txt (line 47)) (28.8.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	254 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	255 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	256 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	257 Requirement already satisfied: pykube==0.15.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r /dev/stdin (line 1)) (0.15.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	258 Requirement already satisfied: PyYAML in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	259 Requirement already satisfied: requests>=2.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (2.22.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	260 Requirement already satisfied: tzlocal in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	261 Requirement already satisfied: six>=1.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (1.11.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	262 Requirement already satisfied: requests-oauthlib in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	263 Requirement already satisfied: oauth2client in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (4.1.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	264 Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (3.0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	265 Requirement already satisfied: idna<2.9,>=2.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (2.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	266 Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (1.25.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	267 Requirement already satisfied: certifi>=2017.4.17 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (2019.11.28)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	268 Requirement already satisfied: pytz in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from tzlocal->pykube==0.15.0->-r /dev/stdin (line 1)) (2019.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	269 Requirement already satisfied: oauthlib>=3.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests-oauthlib->pykube==0.15.0->-r /dev/stdin (line 1)) (3.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	270 Requirement already satisfied: pyasn1>=0.1.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.4.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	271 Requirement already satisfied: pyasn1-modules>=0.0.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.2.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	272 Requirement already satisfied: httplib2>=0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.15.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	273 Requirement already satisfied: rsa>=3.1.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	274 The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	275 Testing using galaxy_root /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	276 Testing tools with command [cd /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev && if [ -d .venv ] \|\| [ -f dist-eggs.ini ]; then GALAXY_VIRTUAL_ENV=.venv; else GALAXY_VIRTUAL_ENV=/Users/jj/.planemo/gx_venv; fi && export GALAXY_VIRTUAL_ENV && if [ ! -e "$GALAXY_VIRTUAL_ENV" ]; then /Users/jj/.planemo/gx_venv/bin/virtualenv -p /Users/jj/.planemo/gx_venv/bin/python2.7 $GALAXY_VIRTUAL_ENV; fi && if [ -e "$GALAXY_VIRTUAL_ENV" ]; then . "$GALAXY_VIRTUAL_ENV"/bin/activate; fi && sh run_tests.sh $COMMON_STARTUP_ARGS --report_file /Users/jj/gx/gh/jj/galaxytools/optitype/tool_test_output.html --xunit_report_file /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/xunit.xml --structured_data_report_file /Users/jj/gx/gh/jj/galaxytools/optitype/tool_test_output.json functional.test_toolbox]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	277 galaxy.tool_util.deps.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	278 Unsetting $PYTHONPATH
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	279 Activating virtualenv at /Users/jj/.planemo/gx_venv
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	280 Galaxy support for Python 2.7 is deprecated, please consider moving to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	281 Python >= 3.5 .
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	282 https://docs.galaxyproject.org/en/latest/admin/python.html contains instructions
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	283 on how to force Galaxy to use a different version.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	284 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	285 Requirement already satisfied: pip>=8.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (20.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	286 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	287 Ignoring pyinotify: markers 'sys_platform != "win32" and sys_platform != "darwin" and sys_platform != "sunos5"' don't match your environment
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	288 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	289 Requirement already satisfied: adal==1.2.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 3)) (1.2.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	290 Requirement already satisfied: amqp==2.5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 4)) (2.5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	291 Requirement already satisfied: appdirs==1.4.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 5)) (1.4.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	292 Requirement already satisfied: attrs==19.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 6)) (19.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	293 Requirement already satisfied: azure-common==1.1.14 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 7)) (1.1.14)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	294 Requirement already satisfied: azure-cosmosdb-nspkg==2.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 8)) (2.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	295 Requirement already satisfied: azure-cosmosdb-table==1.0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 9)) (1.0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	296 Requirement already satisfied: azure-mgmt-compute==4.0.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 10)) (4.0.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	297 Requirement already satisfied: azure-mgmt-devtestlabs==2.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 11)) (2.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	298 Requirement already satisfied: azure-mgmt-network==2.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 12)) (2.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	299 Requirement already satisfied: azure-mgmt-nspkg==3.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 13)) (3.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	300 Requirement already satisfied: azure-mgmt-resource==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 14)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	301 Requirement already satisfied: azure-mgmt-storage==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 15)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	302 Requirement already satisfied: azure-nspkg==3.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 16)) (3.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	303 Requirement already satisfied: azure-storage-blob==1.3.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 17)) (1.3.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	304 Requirement already satisfied: azure-storage-common==1.4.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 18)) (1.4.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	305 Requirement already satisfied: azure-storage-nspkg==3.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 19)) (3.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	306 Requirement already satisfied: babel==2.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 20)) (2.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	307 Requirement already satisfied: bagit==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 21)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	308 Requirement already satisfied: bcrypt==3.1.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 22)) (3.1.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	309 Requirement already satisfied: bdbag==1.5.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 23)) (1.5.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	310 Requirement already satisfied: beaker==1.11.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 24)) (1.11.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	311 Requirement already satisfied: bioblend==0.13.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 25)) (0.13.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	312 Requirement already satisfied: bleach==3.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 26)) (3.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	313 Requirement already satisfied: boltons==19.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 27)) (19.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	314 Requirement already satisfied: boto3==1.9.114 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 28)) (1.9.114)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	315 Requirement already satisfied: boto==2.49.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 29)) (2.49.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	316 Requirement already satisfied: botocore==1.12.253 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 30)) (1.12.253)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	317 Requirement already satisfied: bx-python==0.8.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 31)) (0.8.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	318 Requirement already satisfied: bz2file==0.98 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 32)) (0.98)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	319 Requirement already satisfied: cachecontrol==0.11.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 33)) (0.11.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	320 Requirement already satisfied: cachetools==3.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 34)) (3.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	321 Requirement already satisfied: certifi==2019.11.28 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 35)) (2019.11.28)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	322 Requirement already satisfied: cffi==1.13.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 36)) (1.13.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	323 Requirement already satisfied: chardet==3.0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 37)) (3.0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	324 Requirement already satisfied: cheetah3==3.2.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 38)) (3.2.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	325 Requirement already satisfied: cliff==2.16.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 39)) (2.16.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	326 Requirement already satisfied: cloudauthz==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 40)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	327 Requirement already satisfied: cloudbridge==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 41)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	328 Requirement already satisfied: cmd2==0.8.9 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 42)) (0.8.9)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	329 Requirement already satisfied: coloredlogs==10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 43)) (10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	330 Requirement already satisfied: configparser==4.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 44)) (4.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	331 Requirement already satisfied: contextlib2==0.6.0.post1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 45)) (0.6.0.post1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	332 Requirement already satisfied: cryptography==2.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 46)) (2.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	333 Requirement already satisfied: cwltool==1.0.20191225192155 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 47)) (1.0.20191225192155)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	334 Requirement already satisfied: debtcollector==1.22.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 48)) (1.22.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	335 Requirement already satisfied: decorator==4.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 49)) (4.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	336 Requirement already satisfied: deprecated==1.2.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 50)) (1.2.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	337 Requirement already satisfied: deprecation==2.0.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 51)) (2.0.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	338 Requirement already satisfied: dictobj==0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 52)) (0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	339 Requirement already satisfied: docopt==0.6.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 53)) (0.6.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	340 Requirement already satisfied: docutils==0.15.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 54)) (0.15.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	341 Requirement already satisfied: dogpile.cache==0.9.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 55)) (0.9.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	342 Requirement already satisfied: ecdsa==0.14.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 56)) (0.14.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	343 Requirement already satisfied: enum34==1.1.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 57)) (1.1.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	344 Requirement already satisfied: fabric3==1.14.post1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 58)) (1.14.post1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	345 Requirement already satisfied: funcsigs==1.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 59)) (1.0.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	346 Requirement already satisfied: functools32==3.2.3.post2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 60)) (3.2.3.post2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	347 Requirement already satisfied: future==0.18.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 61)) (0.18.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	348 Requirement already satisfied: futures==3.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 62)) (3.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	349 Requirement already satisfied: galaxy-sequence-utils==1.1.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 63)) (1.1.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	350 Requirement already satisfied: google-api-python-client==1.7.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 64)) (1.7.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	351 Requirement already satisfied: google-auth-httplib2==0.0.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 65)) (0.0.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	352 Requirement already satisfied: google-auth==1.7.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 66)) (1.7.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	353 Requirement already satisfied: gxformat2==0.10.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 67)) (0.10.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	354 Requirement already satisfied: h5py==2.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 68)) (2.10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	355 Requirement already satisfied: httplib2==0.15.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 69)) (0.15.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	356 Requirement already satisfied: humanfriendly==4.18 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 70)) (4.18)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	357 Requirement already satisfied: idna==2.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 71)) (2.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	358 Requirement already satisfied: importlib-metadata==1.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 72)) (1.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	359 Requirement already satisfied: ipaddress==1.0.23 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 73)) (1.0.23)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	360 Requirement already satisfied: isa-rwval==0.10.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 74)) (0.10.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	361 Requirement already satisfied: iso8601==0.1.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 75)) (0.1.12)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	362 Requirement already satisfied: isodate==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 76)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	363 Requirement already satisfied: jmespath==0.9.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 77)) (0.9.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	364 Requirement already satisfied: jsonpatch==1.24 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 78)) (1.24)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	365 Requirement already satisfied: jsonpointer==2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 79)) (2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	366 Requirement already satisfied: jsonschema==3.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 80)) (3.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	367 Requirement already satisfied: keystoneauth1==3.18.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 81)) (3.18.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	368 Requirement already satisfied: kombu==4.6.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 82)) (4.6.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	369 Requirement already satisfied: lockfile==0.12.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 83)) (0.12.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	370 Requirement already satisfied: lxml==4.4.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 84)) (4.4.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	371 Requirement already satisfied: mako==1.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 85)) (1.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	372 Requirement already satisfied: markdown==3.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 86)) (3.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	373 Requirement already satisfied: markupsafe==1.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 87)) (1.1.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	374 Requirement already satisfied: mercurial==5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 88)) (5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	375 Requirement already satisfied: mistune==0.8.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 89)) (0.8.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	376 Requirement already satisfied: monotonic==1.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 90)) (1.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	377 Requirement already satisfied: more-itertools==5.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 91)) (5.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	378 Requirement already satisfied: msgpack==0.6.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 92)) (0.6.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	379 Requirement already satisfied: msrest==0.5.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 93)) (0.5.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	380 Requirement already satisfied: msrestazure==0.5.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 94)) (0.5.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	381 Requirement already satisfied: munch==2.5.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 95)) (2.5.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	382 Requirement already satisfied: mypy-extensions==0.4.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 96)) (0.4.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	383 Requirement already satisfied: netaddr==0.7.19 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 97)) (0.7.19)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	384 Requirement already satisfied: netifaces==0.10.9 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 98)) (0.10.9)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	385 Requirement already satisfied: networkx==1.11 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 99)) (1.11)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	386 Requirement already satisfied: nodeenv==1.3.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 100)) (1.3.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	387 Requirement already satisfied: nose==1.3.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 101)) (1.3.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	388 Requirement already satisfied: numpy==1.16.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 102)) (1.16.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	389 Requirement already satisfied: oauth2client==4.1.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 103)) (4.1.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	390 Requirement already satisfied: oauthlib==3.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 104)) (3.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	391 Requirement already satisfied: openstacksdk==0.17.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 105)) (0.17.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	392 Requirement already satisfied: os-client-config==1.33.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 106)) (1.33.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	393 Requirement already satisfied: os-service-types==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 107)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	394 Requirement already satisfied: osc-lib==1.14.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 108)) (1.14.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	395 Requirement already satisfied: oslo.config==6.12.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 109)) (6.12.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	396 Requirement already satisfied: oslo.context==2.23.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 110)) (2.23.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	397 Requirement already satisfied: oslo.i18n==3.25.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 111)) (3.25.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	398 Requirement already satisfied: oslo.log==3.45.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 112)) (3.45.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	399 Requirement already satisfied: oslo.serialization==2.29.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 113)) (2.29.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	400 Requirement already satisfied: oslo.utils==3.42.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 114)) (3.42.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	401 Requirement already satisfied: packaging==20.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 115)) (20.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	402 Requirement already satisfied: paramiko==2.7.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 116)) (2.7.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	403 Requirement already satisfied: parsley==1.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 117)) (1.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	404 Requirement already satisfied: paste==3.2.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 118)) (3.2.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	405 Requirement already satisfied: pastedeploy==2.0.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 119)) (2.0.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	406 Requirement already satisfied: pastescript==3.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 120)) (3.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	407 Requirement already satisfied: pathlib2==2.3.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 121)) (2.3.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	408 Requirement already satisfied: pbr==5.4.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 122)) (5.4.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	409 Requirement already satisfied: prettytable==0.7.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 123)) (0.7.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	410 Requirement already satisfied: prov==1.5.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 124)) (1.5.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	411 Requirement already satisfied: psutil==5.6.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 125)) (5.6.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	412 Requirement already satisfied: pulsar-galaxy-lib==0.14.0.dev1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 126)) (0.14.0.dev1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	413 Requirement already satisfied: pyasn1-modules==0.2.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 127)) (0.2.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	414 Requirement already satisfied: pyasn1==0.4.8 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 128)) (0.4.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	415 Requirement already satisfied: pycparser==2.19 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 129)) (2.19)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	416 Requirement already satisfied: pycryptodome==3.9.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 130)) (3.9.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	417 Requirement already satisfied: pyeventsystem==0.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 131)) (0.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	418 Requirement already satisfied: pyjwt==1.7.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 133)) (1.7.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	419 Requirement already satisfied: pykwalify==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 134)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	420 Requirement already satisfied: pynacl==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 135)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	421 Requirement already satisfied: pyopenssl==19.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 136)) (19.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	422 Requirement already satisfied: pyparsing==2.4.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 137)) (2.4.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	423 Requirement already satisfied: pyperclip==1.7.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 138)) (1.7.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	424 Requirement already satisfied: pyrsistent==0.15.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 139)) (0.15.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	425 Requirement already satisfied: pysam==0.15.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 140)) (0.15.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	426 Requirement already satisfied: pysftp==0.2.9 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 141)) (0.2.9)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	427 Requirement already satisfied: python-cinderclient==4.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 142)) (4.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	428 Requirement already satisfied: python-dateutil==2.8.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 143)) (2.8.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	429 Requirement already satisfied: python-glanceclient==2.12.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 144)) (2.12.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	430 Requirement already satisfied: python-jose==3.0.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 145)) (3.0.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	431 Requirement already satisfied: python-keystoneclient==3.17.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 146)) (3.17.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	432 Requirement already satisfied: python-neutronclient==6.9.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 147)) (6.9.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	433 Requirement already satisfied: python-novaclient==11.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 148)) (11.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	434 Requirement already satisfied: python-openid==2.2.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 149)) (2.2.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	435 Requirement already satisfied: python-swiftclient==3.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 150)) (3.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	436 Requirement already satisfied: pytz==2019.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 151)) (2019.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	437 Requirement already satisfied: pyuwsgi==2.0.18.post0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 152)) (2.0.18.post0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	438 Requirement already satisfied: pyyaml==5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 153)) (5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	439 Requirement already satisfied: rdflib-jsonld==0.4.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 154)) (0.4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	440 Requirement already satisfied: rdflib==4.2.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 155)) (4.2.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	441 Requirement already satisfied: repoze.lru==0.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 156)) (0.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	442 Requirement already satisfied: requests-oauthlib==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 157)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	443 Requirement already satisfied: requests-toolbelt==0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 158)) (0.9.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	444 Requirement already satisfied: requests==2.22.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 159)) (2.22.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	445 Requirement already satisfied: requestsexceptions==1.4.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 160)) (1.4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	446 Requirement already satisfied: rfc3986==1.3.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 161)) (1.3.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	447 Requirement already satisfied: routes==2.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 162)) (2.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	448 Requirement already satisfied: rsa==4.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 163)) (4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	449 Requirement already satisfied: ruamel.ordereddict==0.4.14 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 164)) (0.4.14)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	450 Requirement already satisfied: ruamel.yaml.clib==0.2.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 165)) (0.2.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	451 Requirement already satisfied: ruamel.yaml==0.16.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 166)) (0.16.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	452 Requirement already satisfied: s3transfer==0.2.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 167)) (0.2.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	453 Requirement already satisfied: scandir==1.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 168)) (1.10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	454 Requirement already satisfied: schema-salad==4.5.20191229160203 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 169)) (4.5.20191229160203)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	455 Requirement already satisfied: setuptools-scm==3.3.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 170)) (3.3.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	456 Requirement already satisfied: shellescape==3.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 171)) (3.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	457 Requirement already satisfied: simplejson==3.17.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 172)) (3.17.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	458 Requirement already satisfied: six==1.11.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 173)) (1.11.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	459 Requirement already satisfied: social-auth-core[openidconnect]==3.1.0+gx0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 174)) (3.1.0+gx0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	460 Requirement already satisfied: sqlalchemy-migrate==0.13.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 175)) (0.13.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	461 Requirement already satisfied: sqlalchemy-utils==0.35.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 176)) (0.35.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	462 Requirement already satisfied: sqlalchemy==1.3.11 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 177)) (1.3.11)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	463 Requirement already satisfied: sqlparse==0.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 178)) (0.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	464 Requirement already satisfied: stevedore==1.31.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 179)) (1.31.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	465 Requirement already satisfied: subprocess32==3.5.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 180)) (3.5.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	466 Requirement already satisfied: svgwrite==1.3.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 181)) (1.3.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	467 Requirement already satisfied: tempita==0.5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 182)) (0.5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	468 Requirement already satisfied: tenacity==4.12.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 183)) (4.12.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	469 Requirement already satisfied: typing-extensions==3.7.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 184)) (3.7.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	470 Requirement already satisfied: typing==3.7.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 185)) (3.7.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	471 Requirement already satisfied: tzlocal==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 186)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	472 Requirement already satisfied: unicodecsv==0.14.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 187)) (0.14.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	473 Requirement already satisfied: uritemplate==3.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 188)) (3.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	474 Requirement already satisfied: urllib3==1.25.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 189)) (1.25.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	475 Requirement already satisfied: vine==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 190)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	476 Requirement already satisfied: warlock==1.3.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 191)) (1.3.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	477 Requirement already satisfied: wcwidth==0.1.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 192)) (0.1.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	478 Requirement already satisfied: webencodings==0.5.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 193)) (0.5.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	479 Requirement already satisfied: webob==1.8.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 194)) (1.8.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	480 Requirement already satisfied: whoosh==2.7.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 195)) (2.7.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	481 Requirement already satisfied: wrapt==1.11.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 196)) (1.11.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	482 Requirement already satisfied: zipp==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r requirements.txt (line 197)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	483 Requirement already satisfied: alabaster==0.7.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 3)) (0.7.12)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	484 Requirement already satisfied: argh==0.26.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 4)) (0.26.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	485 Requirement already satisfied: atomicwrites==1.3.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 5)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	486 Requirement already satisfied: commonmark==0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 10)) (0.9.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	487 Requirement already satisfied: coverage==4.5.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 13)) (4.5.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	488 Requirement already satisfied: gunicorn==19.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 18)) (19.10.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	489 Requirement already satisfied: imagesize==1.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 20)) (1.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	490 Requirement already satisfied: jinja2==2.10.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 22)) (2.10.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	491 Requirement already satisfied: mirakuru==1.1.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 26)) (1.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	492 Requirement already satisfied: mock==3.0.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 27)) (3.0.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	493 Requirement already satisfied: nosehtml==0.4.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 30)) (0.4.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	494 Requirement already satisfied: pathtools==0.1.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 33)) (0.1.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	495 Requirement already satisfied: pluggy==0.13.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 34)) (0.13.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	496 Requirement already satisfied: port-for==0.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 35)) (0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	497 Requirement already satisfied: py==1.8.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 37)) (1.8.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	498 Requirement already satisfied: pygithub==1.45 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 38)) (1.45)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	499 Requirement already satisfied: pygments==2.5.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 39)) (2.5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	500 Requirement already satisfied: pytest-cov==2.8.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 42)) (2.8.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	501 Requirement already satisfied: pytest-html==1.22.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 43)) (1.22.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	502 Requirement already satisfied: pytest-metadata==1.8.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 44)) (1.8.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	503 Requirement already satisfied: pytest-postgresql==1.4.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 45)) (1.4.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	504 Requirement already satisfied: pytest-pythonpath==0.7.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 46)) (0.7.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	505 Requirement already satisfied: pytest==4.6.6 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 47)) (4.6.6)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	506 Requirement already satisfied: recommonmark==0.6.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 49)) (0.6.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	507 Requirement already satisfied: selenium==3.141.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 52)) (3.141.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	508 Requirement already satisfied: snowballstemmer==2.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 54)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	509 Requirement already satisfied: sphinx-markdown-tables==0.0.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 55)) (0.0.12)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	510 Requirement already satisfied: sphinx-rtd-theme==0.4.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 56)) (0.4.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	511 Requirement already satisfied: sphinx==1.8.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 57)) (1.8.5)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	512 Requirement already satisfied: sphinxcontrib-websupport==1.1.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 58)) (1.1.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	513 Requirement already satisfied: testfixtures==6.10.3 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 59)) (6.10.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	514 Requirement already satisfied: twill==0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 60)) (0.9.1)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	515 Requirement already satisfied: watchdog==0.9.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r ./lib/galaxy/dependencies/dev-requirements.txt (line 63)) (0.9.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	516 Requirement already satisfied: setuptools in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from cwltool==1.0.20191225192155->-r requirements.txt (line 47)) (28.8.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	517 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	518 DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	519 Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	520 Requirement already satisfied: pykube==0.15.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r /dev/stdin (line 1)) (0.15.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	521 Requirement already satisfied: watchdog in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from -r /dev/stdin (line 2)) (0.9.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	522 Requirement already satisfied: PyYAML in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (5.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	523 Requirement already satisfied: requests>=2.12 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (2.22.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	524 Requirement already satisfied: tzlocal in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (2.0.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	525 Requirement already satisfied: six>=1.10.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (1.11.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	526 Requirement already satisfied: requests-oauthlib in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (1.3.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	527 Requirement already satisfied: oauth2client in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (4.1.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	528 Requirement already satisfied: pathtools>=0.1.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from watchdog->-r /dev/stdin (line 2)) (0.1.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	529 Requirement already satisfied: argh>=0.24.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from watchdog->-r /dev/stdin (line 2)) (0.26.2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	530 Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (3.0.4)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	531 Requirement already satisfied: idna<2.9,>=2.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (2.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	532 Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (1.25.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	533 Requirement already satisfied: certifi>=2017.4.17 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (2019.11.28)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	534 Requirement already satisfied: pytz in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from tzlocal->pykube==0.15.0->-r /dev/stdin (line 1)) (2019.3)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	535 Requirement already satisfied: oauthlib>=3.0.0 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from requests-oauthlib->pykube==0.15.0->-r /dev/stdin (line 1)) (3.1.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	536 Requirement already satisfied: pyasn1>=0.1.7 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.4.8)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	537 Requirement already satisfied: pyasn1-modules>=0.0.5 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.2.7)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	538 Requirement already satisfied: httplib2>=0.9.1 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.15.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	539 Requirement already satisfied: rsa>=3.1.4 in /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (4.0)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	540 The Galaxy client build is being skipped due to the SKIP_CLIENT_BUILD environment variable.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	541 Unsetting $PYTHONPATH
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	542 Activating virtualenv at /Users/jj/.planemo/gx_venv
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	543 Galaxy support for Python 2.7 is deprecated, please consider moving to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	544 Python >= 3.5 .
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	545 https://docs.galaxyproject.org/en/latest/admin/python.html contains instructions
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	546 on how to force Galaxy to use a different version.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	547 2020-03-19 13:08:41,856 INFO [galaxy.queue_worker] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmprRkKGz/tmpaHgrap/tmpqqL2uw/database/control.sqlite?isolation_level=IMMEDIATE
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	548 2020-03-19 13:08:41,894 INFO [galaxy.model.migrate.check] Creating database for URI [sqlite:////private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy.sqlite?isolation_level=IMMEDIATE]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	549 2020-03-19 13:08:41,900 INFO [galaxy.model.migrate.check] Creating new database from scratch, skipping migrations
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	550 2020-03-19 13:08:42,531 INFO [galaxy.config] Install database targetting Galaxy's database configuration.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	551 2020-03-19 13:08:42,829 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/all_fasta.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	552 2020-03-19 13:08:42,830 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/bfast_indexes.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	553 2020-03-19 13:08:42,831 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/blastdb.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	554 2020-03-19 13:08:42,832 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/blastdb_p.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	555 2020-03-19 13:08:42,832 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/blastdb_d.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	556 2020-03-19 13:08:42,833 WARNI [galaxy.tools.data] Cannot find index file 'bwa_index.loc' for tool data table 'bwa_indexes'
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	557 2020-03-19 13:08:42,833 WARNI [galaxy.tools.data] Cannot find index file 'bwa_index_color.loc' for tool data table 'bwa_indexes_color'
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	558 2020-03-19 13:08:42,833 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/maf_index.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	559 2020-03-19 13:08:42,835 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/ngs_sim_fasta.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	560 2020-03-19 13:08:42,835 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/perm_base_index.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	561 2020-03-19 13:08:42,836 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/perm_color_index.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	562 2020-03-19 13:08:42,836 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/picard_index.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	563 2020-03-19 13:08:42,837 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/picard_index.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	564 2020-03-19 13:08:42,838 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/mosaik_index.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	565 2020-03-19 13:08:42,838 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/twobit.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	566 2020-03-19 13:08:43,014 WARNI [galaxy.tools.data] Line 1 in tool data table 'igv_broad_genomes' is invalid (HINT: '<TAB>' characters must be used to separate fields):
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	567 <Server-Side Genome List>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	568 2020-03-19 13:08:43,017 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/liftOver.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	569 2020-03-19 13:08:43,018 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/bam_iobio.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	570 2020-03-19 13:08:43,019 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/vcf_iobio.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	571 2020-03-19 13:08:43,019 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/biom_simple_display.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	572 2020-03-19 13:08:43,020 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/intermine_simple_display.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	573 2020-03-19 13:08:43,021 INFO [galaxy.tools.data] Could not find tool data /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tool-data/icn3d_simple_display.loc, reading sample
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	574 2020-03-19 13:08:43,093 INFO [galaxy.web_stack.handlers] JobConfiguration: No job handler assignment method is set, defaulting to 'db-preassign', set the `assign_with` attribute on <handlers> to override the default
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	575 2020-03-19 13:08:43,094 INFO [galaxy.jobs] Job handler assignment methods set to: db-preassign
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	576 2020-03-19 13:08:43,094 INFO [galaxy.jobs] Tag [_default_] handlers: main
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	577 2020-03-19 13:08:43,342 WARNI [galaxy.tools] The default shed tool config file (/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/lib/galaxy/config/sample/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	578 2020-03-19 13:08:43,342 INFO [galaxy.tools.toolbox.base] Parsing the tool configuration /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/tool_conf.xml
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	579 2020-03-19 13:08:43,457 WARNI [galaxy.tools] The default shed tool config file (/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/lib/galaxy/config/sample/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	580 2020-03-19 13:08:43,457 INFO [galaxy.tools.toolbox.base] Parsing the tool configuration /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/shed_tools_conf.xml
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	581 2020-03-19 13:08:43,457 WARNI [galaxy.tools] The default shed tool config file (/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/lib/galaxy/config/sample/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	582 2020-03-19 13:08:43,457 INFO [galaxy.tools.toolbox.base] Parsing the tool configuration /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/empty_tool_conf.xml
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	583 2020-03-19 13:08:44,009 INFO [galaxy.jobs] Handler 'main' will load all configured runner plugins
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	584 2020-03-19 13:08:44,062 INFO [galaxy.jobs.handler] job handler stop queue started
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	585 2020-03-19 13:08:44,076 INFO [galaxy.jobs.handler] job handler queue started
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	586 2020-03-19 13:08:44,079 INFO [galaxy.jobs.handler] job handler stop queue started
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	587 2020-03-19 13:08:44,101 INFO [galaxy.workflow.scheduling_manager] No workflow schedulers plugin config file defined, using default scheduler.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	588 2020-03-19 13:08:44,125 INFO [galaxy.app] Galaxy app startup finished (3415.358 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	589 2020-03-19 13:08:45,281 INFO [galaxy.queue_worker] Binding and starting galaxy control worker for main
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	590 2020-03-19 13:08:45,284 INFO [galaxy.web_stack] Galaxy server instance 'main' is running
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	591 /Users/jj/.planemo/gx_venv/lib/python2.7/site-packages/sqlalchemy/sql/sqltypes.py:666: SAWarning: Dialect sqlite+pysqlite does not support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	592 "storage." % (dialect.name, dialect.driver)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	593 ( optitype ) > Test-1 ... 2020-03-19 13:08:46,121 INFO [galaxy.tools] Validated and populated state for tool request (22.694 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	594 2020-03-19 13:08:46,334 INFO [galaxy.tools.actions.upload_common] tool upload1 created job id 1
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	595 2020-03-19 13:08:46,394 INFO [galaxy.web_stack.handlers] Flushed transaction for Job[id=1,tool_id=upload1] (18.226 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	596 2020-03-19 13:08:46,394 INFO [galaxy.web_stack.handlers] (Job[id=1,tool_id=upload1]) Handler 'main' assigned using 'db-preassign' assignment method
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	597 2020-03-19 13:08:47,463 INFO [galaxy.jobs.handler] (1) Job dispatched
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	598 2020-03-19 13:08:47,711 INFO [galaxy.jobs.command_factory] Built script [/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/1/tool_script.sh] for tool command [python '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tools/data_source/upload.py' /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/1/registry.xml /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/1/upload_params.json 1:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/1/working/dataset_eff120a9-00d7-49cb-b499-a1aa4d89b675_files:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/e/f/f/dataset_eff120a9-00d7-49cb-b499-a1aa4d89b675.dat]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	599 2020-03-19 13:08:59,952 INFO [galaxy.tools] Validated and populated state for tool request (16.296 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	600 2020-03-19 13:09:00,105 INFO [galaxy.tools.actions.upload_common] tool upload1 created job id 2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	601 2020-03-19 13:09:00,157 INFO [galaxy.web_stack.handlers] Flushed transaction for Job[id=2,tool_id=upload1] (23.682 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	602 2020-03-19 13:09:00,157 INFO [galaxy.web_stack.handlers] (Job[id=2,tool_id=upload1]) Handler 'main' assigned using 'db-preassign' assignment method
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	603 2020-03-19 13:09:01,142 INFO [galaxy.jobs.handler] (2) Job dispatched
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	604 2020-03-19 13:09:01,352 INFO [galaxy.jobs.command_factory] Built script [/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/2/tool_script.sh] for tool command [python '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tools/data_source/upload.py' /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/2/registry.xml /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/2/upload_params.json 2:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/2/working/dataset_022eddc9-7baf-417f-bf3d-c0ac83dec823_files:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/0/2/2/dataset_022eddc9-7baf-417f-bf3d-c0ac83dec823.dat]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	605 2020-03-19 13:09:06,983 INFO [galaxy.tools] Validated and populated state for tool request (23.608 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	606 2020-03-19 13:09:07,003 INFO [galaxy.tools.actions] Handled output named coverage_plot for tool optitype (2.875 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	607 2020-03-19 13:09:07,005 INFO [galaxy.tools.actions] Handled output named result for tool optitype (2.115 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	608 2020-03-19 13:09:07,036 INFO [galaxy.tools.actions] Added output datasets to history (30.977 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	609 2020-03-19 13:09:07,038 INFO [galaxy.tools.actions] Setup for job Job[unflushed,tool_id=optitype] complete, ready to be enqueued (2.073 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	610 2020-03-19 13:09:07,106 INFO [galaxy.web_stack.handlers] Flushed transaction for Job[id=3,tool_id=optitype] (67.169 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	611 2020-03-19 13:09:07,106 INFO [galaxy.web_stack.handlers] (Job[id=3,tool_id=optitype]) Handler 'main' assigned using 'db-preassign' assignment method
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	612 2020-03-19 13:09:07,511 INFO [galaxy.jobs.handler] (3) Job dispatched
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	613
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	614 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	615
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	616 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	617
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	618 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	619
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	620 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	621 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	622 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	623 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	624 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	625 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	626 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	627 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	628 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	629 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	630 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	631 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	632
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	633 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	634 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	635
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	636 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	637
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	638 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	639
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	640
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	641
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	642 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	643
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	644 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	645
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	646 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	647
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	648 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	649 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	650 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	651 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	652 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	653 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	654 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	655 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	656 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	657 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	658 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	659 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	660
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	661 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	662 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	663
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	664 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	665
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	666 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	667
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	668
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	669
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	670 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	671
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	672 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	673
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	674 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	675
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	676 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	677 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	678 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	679 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	680 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	681 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	682 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	683 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	684 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	685 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	686 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	687 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	688
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	689 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	690 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	691
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	692 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	693
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	694 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	695
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	696
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	697
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	698 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	699
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	700 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	701
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	702 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	703
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	704 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	705 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	706 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	707 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	708 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	709 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	710 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	711 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	712 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	713 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	714 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	715 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	716
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	717 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	718 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	719
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	720 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	721
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	722 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	723
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	724
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	725
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	726 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	727
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	728 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	729
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	730 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	731
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	732 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	733 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	734 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	735 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	736 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	737 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	738 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	739 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	740 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	741 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	742 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	743 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	744
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	745 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	746 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	747
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	748 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	749
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	750 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	751
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	752
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	753
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	754 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	755
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	756 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	757
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	758 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	759
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	760 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	761 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	762 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	763 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	764 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	765 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	766 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	767 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	768 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	769 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	770 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	771 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	772
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	773 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	774 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	775
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	776 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	777
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	778 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	779
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	780
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	781
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	782 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	783
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	784 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	785
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	786 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	787
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	788 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	789 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	790 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	791 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	792 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	793 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	794 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	795 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	796 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	797 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	798 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	799 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	800
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	801 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	802 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	803
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	804 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	805
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	806 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	807
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	808
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	809
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	810 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	811
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	812 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	813
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	814 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	815
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	816 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	817 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	818 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	819 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	820 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	821 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	822 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	823 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	824 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	825 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	826 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	827 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	828
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	829 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	830 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	831
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	832 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	833
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	834 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	835
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	836
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	837 2020-03-19 13:10:02,015 INFO [galaxy.jobs.command_factory] Built script [/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/3/tool_script.sh] for tool command [ln -s '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/e/f/f/dataset_eff120a9-00d7-49cb-b499-a1aa4d89b675.dat' reads_1.fastq && ln -s '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/0/2/2/dataset_022eddc9-7baf-417f-bf3d-c0ac83dec823.dat' reads_2.fastq && RAZERS3=`which razers3` && sed "s#path_to_razers3#$RAZERS3#" '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/3/configs/tmpTaGSuA' \| sed "s/threads=16/threads=$GALAXY_SLOTS/" > config.ini && OptiTypePipeline.py --rna --input reads_1.fastq reads_2.fastq --config "`pwd`/config.ini" --outdir output_dir && cp output_dir//_coverage_plot.pdf /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/d/5/f/dataset_d5ff36fd-e6ca-4e61-89ee-dc626fb865fe.dat && cp output_dir//_result.tsv /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/1/0/7/dataset_10776cbe-d39b-419d-9014-c8b440e96190.dat]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	838 2020-03-19 13:10:05,636 INFO [galaxy.tool_util.output_checker] Job 3: {'code_desc': '', 'error_level': 3, 'type': 'exit_code', 'exit_code': 1, 'desc': 'Fatal error: Exit code 1 ()'}
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	839 FAIL
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	840 ( optitype ) > Test-2 ... 2020-03-19 13:10:51,885 INFO [galaxy.tools] Validated and populated state for tool request (22.757 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	841 2020-03-19 13:10:52,059 INFO [galaxy.tools.actions.upload_common] tool upload1 created job id 4
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	842 2020-03-19 13:10:52,103 INFO [galaxy.web_stack.handlers] Flushed transaction for Job[id=4,tool_id=upload1] (16.285 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	843 2020-03-19 13:10:52,104 INFO [galaxy.web_stack.handlers] (Job[id=4,tool_id=upload1]) Handler 'main' assigned using 'db-preassign' assignment method
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	844 2020-03-19 13:10:52,739 INFO [galaxy.jobs.handler] (4) Job dispatched
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	845 2020-03-19 13:10:52,939 INFO [galaxy.jobs.command_factory] Built script [/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/4/tool_script.sh] for tool command [python '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tools/data_source/upload.py' /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/4/registry.xml /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/4/upload_params.json 5:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/4/working/dataset_e0780a69-3eba-44ba-a023-0167344a63fd_files:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/e/0/7/dataset_e0780a69-3eba-44ba-a023-0167344a63fd.dat]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	846 2020-03-19 13:10:58,904 INFO [galaxy.tools] Validated and populated state for tool request (19.855 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	847 2020-03-19 13:10:59,090 INFO [galaxy.tools.actions.upload_common] tool upload1 created job id 5
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	848 2020-03-19 13:10:59,135 INFO [galaxy.web_stack.handlers] Flushed transaction for Job[id=5,tool_id=upload1] (15.200 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	849 2020-03-19 13:10:59,135 INFO [galaxy.web_stack.handlers] (Job[id=5,tool_id=upload1]) Handler 'main' assigned using 'db-preassign' assignment method
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	850 2020-03-19 13:11:00,120 INFO [galaxy.jobs.handler] (5) Job dispatched
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	851 2020-03-19 13:11:00,313 INFO [galaxy.jobs.command_factory] Built script [/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/5/tool_script.sh] for tool command [python '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/tools/data_source/upload.py' /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/5/registry.xml /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/5/upload_params.json 6:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/5/working/dataset_5d34cb9a-478f-46a2-8a64-3534234ee2d3_files:/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/5/d/3/dataset_5d34cb9a-478f-46a2-8a64-3534234ee2d3.dat]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	852 2020-03-19 13:11:05,958 INFO [galaxy.tools] Validated and populated state for tool request (21.036 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	853 2020-03-19 13:11:05,975 INFO [galaxy.tools.actions] Handled output named coverage_plot for tool optitype (0.857 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	854 2020-03-19 13:11:05,976 INFO [galaxy.tools.actions] Handled output named result for tool optitype (0.626 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	855 2020-03-19 13:11:06,008 INFO [galaxy.tools.actions] Added output datasets to history (31.926 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	856 2020-03-19 13:11:06,010 INFO [galaxy.tools.actions] Setup for job Job[unflushed,tool_id=optitype] complete, ready to be enqueued (1.959 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	857 2020-03-19 13:11:06,082 INFO [galaxy.web_stack.handlers] Flushed transaction for Job[id=6,tool_id=optitype] (71.447 ms)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	858 2020-03-19 13:11:06,082 INFO [galaxy.web_stack.handlers] (Job[id=6,tool_id=optitype]) Handler 'main' assigned using 'db-preassign' assignment method
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	859 2020-03-19 13:11:06,400 INFO [galaxy.jobs.handler] (6) Job dispatched
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	860
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	861 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	862
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	863 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	864
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	865 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	866
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	867 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	868 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	869 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	870 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	871 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	872 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	873 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	874 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	875 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	876 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	877 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	878 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	879
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	880 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	881 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	882
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	883 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	884
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	885 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	886
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	887
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	888
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	889 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	890
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	891 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	892
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	893 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	894
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	895 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	896 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	897 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	898 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	899 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	900 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	901 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	902 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	903 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	904 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	905 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	906 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	907
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	908 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	909 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	910
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	911 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	912
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	913 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	914
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	915
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	916
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	917 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	918
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	919 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	920
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	921 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	922
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	923 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	924 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	925 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	926 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	927 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	928 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	929 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	930 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	931 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	932 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	933 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	934 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	935
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	936 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	937 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	938
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	939 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	940
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	941 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	942
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	943
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	944
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	945 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	946
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	947 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	948
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	949 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	950
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	951 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	952 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	953 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	954 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	955 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	956 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	957 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	958 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	959 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	960 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	961 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	962 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	963
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	964 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	965 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	966
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	967 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	968
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	969 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	970
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	971
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	972
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	973 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	974
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	975 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	976
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	977 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	978
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	979 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	980 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	981 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	982 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	983 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	984 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	985 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	986 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	987 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	988 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	989 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	990 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	991
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	992 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	993 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	994
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	995 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	996
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	997 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	998
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	999
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1000
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1001 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1002
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1003 - optitype=1.3.2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1004
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1005 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1006
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1007 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1008 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1009 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1010 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1011 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1012 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1013 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1014 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1015 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1016 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1017 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1018 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1019
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1020 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1021 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1022
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1023 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1024
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1025 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1026
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1027
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1028
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1029 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1030
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1031 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1032
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1033 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1034
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1035 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1036 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1037 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1038 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1039 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1040 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1041 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1042 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1043 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1044 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1045 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1046 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1047
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1048 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1049 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1050
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1051 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1052
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1053 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1054
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1055
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1056
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1057 PackagesNotFoundError: The following packages are not available from current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1058
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1059 - optitype
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1060
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1061 Current channels:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1062
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1063 - https://conda.anaconda.org/iuc/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1064 - https://conda.anaconda.org/iuc/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1065 - https://conda.anaconda.org/conda-forge/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1066 - https://conda.anaconda.org/conda-forge/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1067 - https://conda.anaconda.org/bioconda/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1068 - https://conda.anaconda.org/bioconda/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1069 - https://repo.anaconda.com/pkgs/main/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1070 - https://repo.anaconda.com/pkgs/main/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1071 - https://repo.anaconda.com/pkgs/free/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1072 - https://repo.anaconda.com/pkgs/free/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1073 - https://repo.anaconda.com/pkgs/r/osx-64
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1074 - https://repo.anaconda.com/pkgs/r/noarch
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1075
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1076 To search for alternate channels that may provide the conda package you're
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1077 looking for, navigate to
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1078
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1079 https://anaconda.org
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1080
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1081 and use the search bar at the top of the page.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1082
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1083
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1084 2020-03-19 13:11:40,443 INFO [galaxy.jobs.command_factory] Built script [/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/6/tool_script.sh] for tool command [ln -s '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/e/0/7/dataset_e0780a69-3eba-44ba-a023-0167344a63fd.dat' reads_1.fastq && ln -s '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/5/d/3/dataset_5d34cb9a-478f-46a2-8a64-3534234ee2d3.dat' reads_2.fastq && RAZERS3=`which razers3` && sed "s#path_to_razers3#$RAZERS3#" '/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/job_working_directory/000/6/configs/tmpn4N9W7' \| sed "s/threads=16/threads=$GALAXY_SLOTS/" > config.ini && OptiTypePipeline.py --dna --input reads_1.fastq reads_2.fastq --config "`pwd`/config.ini" --outdir output_dir && cp output_dir//_coverage_plot.pdf /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/2/5/b/dataset_25b6ea5d-79fd-4cee-947a-fefbcba3f2e4.dat && cp output_dir//_result.tsv /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/files/0/1/b/dataset_01b4e0c5-2563-4dc1-8557-411da38239fe.dat]
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1085 2020-03-19 13:11:43,559 INFO [galaxy.tool_util.output_checker] Job 6: {'code_desc': '', 'error_level': 3, 'type': 'exit_code', 'exit_code': 1, 'desc': 'Fatal error: Exit code 1 ()'}
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1086 FAIL
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1087
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1088 ======================================================================
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1089 FAIL: ( optitype ) > Test-1
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1090 ----------------------------------------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1091 Traceback (most recent call last):
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1092 File "/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/test/functional/test_toolbox.py", line 99, in test_tool
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1093 self.do_it(tool_version=tool_version, test_index=test_index)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1094 File "/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/test/functional/test_toolbox.py", line 36, in do_it
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1095 verify_tool(tool_id, self.galaxy_interactor, resource_parameters=resource_parameters, test_index=test_index, tool_version=tool_version, register_job_data=register_job_data)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1096 File "/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/lib/galaxy/tool_util/verify/interactor.py", line 789, in verify_tool
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1097 raise e
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1098 JobOutputsError: Job in error state.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1099 Job in error state.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1100 -------------------- >> begin captured stdout << ---------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1101 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1102 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1103 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1104 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1105 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1106 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1107 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1108 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1109 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1110 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1111 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1112 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1113 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1114 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1115 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1116 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1117 Problem in history with id 2891970512fa2d5a - summary of history's datasets and jobs below.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1118 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1119 \| 1 - CRC_81_N_1_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1120 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1121 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1122 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1123 \| 1,569 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1124 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1125 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1126 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1127 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR397217.2404</td></tr><tr><td>TCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACAT</td></tr><tr><td>+SRR397217.2404</td></tr><tr><td>9FEEBF?DDEE?F?ECFHDHHHHHHHEAFFF@FFHHFHHFFFHDHFHFHHFHHHHFHFHFHFHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHGGHHHHHHH</td></tr><tr><td>@SRR397217.3931</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1128 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1129 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1130 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1131 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1132 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1133 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1134 \| 2 - CRC_81_N_2_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1135 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1136 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1137 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1138 \| 1,515 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1139 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1140 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1141 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1142 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR397217.1805</td></tr><tr><td>GGAAACAGTTCCTCGGAGTGGAGAGGTTTACACCTGCCAAGTGGAGCACCCAAGCCTGACGAGCCCTCTCACAGTGGAATGGAGAGCACGGTCTGAATCTG</td></tr><tr><td>+SRR397217.1805</td></tr><tr><td>HHHHHHHHHHHHHHHHFHEHHHHFHHFHFEHHHHHFFHHFHHHHEFHFHCIGCGIHHHFHHHHFFHFHHHFHAHEHHFFHH@HEED.@EEFBGFE@EFDEA</td></tr><tr><td>@SRR397217.2316</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1143 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1144 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1145 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1146 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1147 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1148 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1149 \| 3 - OptiType on data 2 and data 1 coverage_plot.pdf (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1150 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1151 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1152 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1153 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1154 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1155 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1156 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1157 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1158 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1159 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1160 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1161 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1162 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1163 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1164 \| 4 - OptiType on data 2 and data 1 result.tsv (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1165 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1166 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1167 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1168 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1169 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1170 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1171 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1172 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1173 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1174 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1175 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1176 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1177 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1178 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1179 \| Job 54f2a3a23292eb07
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1180 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1181 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1182 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1183 \| 2020-03-19T18:10:05.914678
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1184 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1185 \| 2020-03-19T18:09:07.093093
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1186 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1187 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1188 \| Job 5729865256bc2525
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1189 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1190 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1191 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1192 \| 2020-03-19T18:09:06.049350
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1193 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1194 \| 2020-03-19T18:09:00.092142
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1195 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1196 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1197 \| Job 2891970512fa2d5a
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1198 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1199 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1200 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1201 \| 2020-03-19T18:08:53.411645
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1202 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1203 \| 2020-03-19T18:08:46.307862
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1204 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1205 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1206 Problem in history with id 2891970512fa2d5a - summary of history's datasets and jobs below.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1207 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1208 \| 1 - CRC_81_N_1_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1209 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1210 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1211 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1212 \| 1,569 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1213 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1214 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1215 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1216 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR397217.2404</td></tr><tr><td>TCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACAT</td></tr><tr><td>+SRR397217.2404</td></tr><tr><td>9FEEBF?DDEE?F?ECFHDHHHHHHHEAFFF@FFHHFHHFFFHDHFHFHHFHHHHFHFHFHFHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHGGHHHHHHH</td></tr><tr><td>@SRR397217.3931</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1217 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1218 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1219 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1220 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1221 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1222 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1223 \| 2 - CRC_81_N_2_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1224 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1225 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1226 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1227 \| 1,515 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1228 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1229 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1230 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1231 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR397217.1805</td></tr><tr><td>GGAAACAGTTCCTCGGAGTGGAGAGGTTTACACCTGCCAAGTGGAGCACCCAAGCCTGACGAGCCCTCTCACAGTGGAATGGAGAGCACGGTCTGAATCTG</td></tr><tr><td>+SRR397217.1805</td></tr><tr><td>HHHHHHHHHHHHHHHHFHEHHHHFHHFHFEHHHHHFFHHFHHHHEFHFHCIGCGIHHHFHHHHFFHFHHHFHAHEHHFFHH@HEED.@EEFBGFE@EFDEA</td></tr><tr><td>@SRR397217.2316</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1232 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1233 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1234 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1235 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1236 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1237 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1238 \| 3 - OptiType on data 2 and data 1 coverage_plot.pdf (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1239 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1240 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1241 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1242 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1243 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1244 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1245 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1246 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1247 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1248 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1249 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1250 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1251 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1252 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1253 \| 4 - OptiType on data 2 and data 1 result.tsv (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1254 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1255 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1256 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1257 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1258 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1259 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1260 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1261 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1262 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1263 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1264 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1265 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1266 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1267 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1268 \| Job 54f2a3a23292eb07
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1269 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1270 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1271 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1272 \| 2020-03-19T18:10:05.914678
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1273 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1274 \| 2020-03-19T18:09:07.093093
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1275 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1276 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1277 \| Job 5729865256bc2525
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1278 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1279 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1280 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1281 \| 2020-03-19T18:09:06.049350
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1282 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1283 \| 2020-03-19T18:09:00.092142
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1284 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1285 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1286 \| Job 2891970512fa2d5a
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1287 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1288 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1289 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1290 \| 2020-03-19T18:08:53.411645
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1291 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1292 \| 2020-03-19T18:08:46.307862
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1293 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1294 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1295
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1296 --------------------- >> end captured stdout << ----------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1297
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1298 ======================================================================
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1299 FAIL: ( optitype ) > Test-2
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1300 ----------------------------------------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1301 Traceback (most recent call last):
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1302 File "/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/test/functional/test_toolbox.py", line 99, in test_tool
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1303 self.do_it(tool_version=tool_version, test_index=test_index)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1304 File "/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/test/functional/test_toolbox.py", line 36, in do_it
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1305 verify_tool(tool_id, self.galaxy_interactor, resource_parameters=resource_parameters, test_index=test_index, tool_version=tool_version, register_job_data=register_job_data)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1306 File "/private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/galaxy-dev/lib/galaxy/tool_util/verify/interactor.py", line 789, in verify_tool
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1307 raise e
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1308 JobOutputsError: Job in error state.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1309 Job in error state.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1310 -------------------- >> begin captured stdout << ---------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1311 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1312 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1313 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1314 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1315 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1316 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1317 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1318 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1319 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1320 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1321 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1322 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1323 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1324 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1325 Collecting package metadata: ...working... done
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1326 Solving environment: ...working... failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1327 Problem in history with id 5729865256bc2525 - summary of history's datasets and jobs below.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1328 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1329 \| 1 - NA11995_SRR766010_1_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1330 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1331 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1332 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1333 \| 1,000 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1334 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1335 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1336 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1337 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR766010.692</td></tr><tr><td>TACAAAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCTGGGAGGCAGAGCTTGCA</td></tr><tr><td>+SRR766010.692</td></tr><tr><td>3BBBCCC>>::CABB@?====66.)B@C?ECCIGEA=ECF=IHGGGHDDHDFDDGHHHBGGGF<GEIG?4HGEGGEIGIIHDGEHFEFFHHHHDDA+D<@@</td></tr><tr><td>@SRR766010.944</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1338 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1339 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1340 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1341 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1342 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1343 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1344 \| 2 - NA11995_SRR766010_2_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1345 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1346 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1347 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1348 \| 1,000 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1349 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1350 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1351 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1352 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR766010.600</td></tr><tr><td>TCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGTTGCGACTACAGGCGCCCACCACCACGCCCAGCTAATTTTTTTTTTTTTTTTT</td></tr><tr><td>+SRR766010.600</td></tr><tr><td>CCCFFFFFHHHHHIIJJJJJJGJJIJJJJJJJJJJJFIJJJJGAHFGGFFFIIGGFFFFEDDDDDBBDDBDDDDDDDDBBDD@CDEDDDDDDDDDBDBDB5</td></tr><tr><td>@SRR766010.666</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1353 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1354 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1355 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1356 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1357 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1358 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1359 \| 3 - OptiType on data 2 and data 1 coverage_plot.pdf (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1360 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1361 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1362 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1363 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1364 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1365 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1366 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1367 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1368 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1369 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1370 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1371 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1372 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1373 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1374 \| 4 - OptiType on data 2 and data 1 result.tsv (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1375 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1376 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1377 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1378 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1379 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1380 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1381 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1382 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1383 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1384 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1385 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1386 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1387 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1388 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1389 \| Job fa6d20d0fb68383f
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1390 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1391 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1392 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1393 \| 2020-03-19T18:11:43.802965
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1394 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1395 \| 2020-03-19T18:11:06.066886
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1396 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1397 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1398 \| Job 7b55dbb89df8f4e5
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1399 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1400 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1401 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1402 \| 2020-03-19T18:11:05.241405
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1403 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1404 \| 2020-03-19T18:10:59.076071
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1405 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1406 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1407 \| Job 8155e4b4bf1581ff
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1408 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1409 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1410 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1411 \| 2020-03-19T18:10:58.105973
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1412 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1413 \| 2020-03-19T18:10:52.045196
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1414 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1415 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1416 Problem in history with id 5729865256bc2525 - summary of history's datasets and jobs below.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1417 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1418 \| 1 - NA11995_SRR766010_1_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1419 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1420 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1421 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1422 \| 1,000 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1423 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1424 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1425 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1426 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR766010.692</td></tr><tr><td>TACAAAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAATCTGGGAGGCAGAGCTTGCA</td></tr><tr><td>+SRR766010.692</td></tr><tr><td>3BBBCCC>>::CABB@?====66.)B@C?ECCIGEA=ECF=IHGGGHDDHDFDDGHHHBGGGF<GEIG?4HGEGGEIGIIHDGEHFEFFHHHHDDA+D<@@</td></tr><tr><td>@SRR766010.944</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1427 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1428 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1429 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1430 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1431 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1432 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1433 \| 2 - NA11995_SRR766010_2_fished.fastq (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1434 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1435 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1436 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1437 \| 1,000 sequences
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1438 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1439 \| uploaded fastqsanger file
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1440 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1441 \| <table cellspacing="0" cellpadding="3"><tr><td>@SRR766010.600</td></tr><tr><td>TCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGTTGCGACTACAGGCGCCCACCACCACGCCCAGCTAATTTTTTTTTTTTTTTTT</td></tr><tr><td>+SRR766010.600</td></tr><tr><td>CCCFFFFFHHHHHIIJJJJJJGJJIJJJJJJJJJJJFIJJJJGAHFGGFFFIIGGFFFFEDDDDDBBDDBDDDDDDDDBBDD@CDEDDDDDDDDDBDBDB5</td></tr><tr><td>@SRR766010.666</td></tr></table>
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1442 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1443 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1444 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1445 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1446 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1447 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1448 \| 3 - OptiType on data 2 and data 1 coverage_plot.pdf (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1449 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1450 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1451 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1452 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1453 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1454 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1455 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1456 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1457 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1458 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1459 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1460 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1461 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1462 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1463 \| 4 - OptiType on data 2 and data 1 result.tsv (HID - NAME)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1464 \| Dataset State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1465 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1466 \| Dataset Blurb:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1467 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1468 \| Dataset Info:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1469 \| Dataset info is empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1470 \| Peek:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1471 \| None
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1472 \| Dataset Job Standard Output:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1473 \| Standard output was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1474 \| Dataset Job Standard Error:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1475 \| Standard error was empty.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1476 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1477 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1478 \| Job fa6d20d0fb68383f
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1479 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1480 \| error
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1481 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1482 \| 2020-03-19T18:11:43.802965
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1483 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1484 \| 2020-03-19T18:11:06.066886
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1485 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1486 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1487 \| Job 7b55dbb89df8f4e5
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1488 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1489 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1490 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1491 \| 2020-03-19T18:11:05.241405
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1492 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1493 \| 2020-03-19T18:10:59.076071
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1494 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1495 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1496 \| Job 8155e4b4bf1581ff
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1497 \| State:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1498 \| ok
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1499 \| Update Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1500 \| 2020-03-19T18:10:58.105973
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1501 \| Create Time:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1502 \| 2020-03-19T18:10:52.045196
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1503 \|
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1504 --------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1505
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1506 --------------------- >> end captured stdout << ----------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1507
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1508 ----------------------------------------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1509 XML: /private/var/folders/b0/_sch3jrj0ndbt8tgqq6fn14m0000gn/T/tmphCb9V4/xunit.xml
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1510 ----------------------------------------------------------------------
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1511 Ran 2 tests in 193.479s
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1512
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1513 FAILED (failures=2)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1514 2020-03-19 13:11:59,384 INFO [test_driver] Shutting down
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1515 2020-03-19 13:11:59,384 INFO [test_driver] Shutting down embedded galaxy web server
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1516 2020-03-19 13:11:59,387 INFO [test_driver] Embedded web server galaxy stopped
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1517 2020-03-19 13:11:59,387 INFO [test_driver] Stopping application galaxy
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1518 Exception in thread Thread-6:
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1519 Traceback (most recent call last):
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1520 File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py", line 801, in __bootstrap_inner
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1521 self.run()
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1522 File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py", line 754, in run
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1523 self.__target(self.__args, *self.__kwargs)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1524 File "/Users/jj/.planemo/gx_venv/lib/python2.7/site-packages/paste/httpserver.py", line 1107, in serve_forever
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1525 self.handle_request()
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1526 File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", line 274, in handle_request
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1527 fd_sets = _eintr_retry(select.select, [self], [], [], timeout)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1528 File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", line 150, in _eintr_retry
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1529 return func(*args)
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1530 error: (9, 'Bad file descriptor')
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1531
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1532 2020-03-19 13:11:59,957 INFO [galaxy.queue_worker] Sending reconfigure_watcher control task.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1533 2020-03-19 13:12:00,046 INFO [galaxy.jobs.handler] sending stop signal to worker thread
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1534 2020-03-19 13:12:00,047 INFO [galaxy.jobs.handler] job handler queue stopped
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1535 2020-03-19 13:12:00,048 INFO [galaxy.jobs.runners] TaskRunner: Sending stop signal to 2 job worker threads
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1536 2020-03-19 13:12:00,048 INFO [galaxy.jobs.runners] Waiting up to 5 seconds for job worker threads to shutdown...
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1537 2020-03-19 13:12:00,050 INFO [galaxy.jobs.runners] All job worker threads shutdown cleanly
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1538 2020-03-19 13:12:00,050 INFO [galaxy.jobs.runners] LocalRunner: Sending stop signal to 4 job worker threads
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1539 2020-03-19 13:12:00,050 INFO [galaxy.jobs.runners] Waiting up to 5 seconds for job worker threads to shutdown...
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1540 2020-03-19 13:12:00,052 INFO [galaxy.jobs.runners] All job worker threads shutdown cleanly
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1541 2020-03-19 13:12:00,052 INFO [galaxy.jobs.handler] sending stop signal to worker thread
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1542 2020-03-19 13:12:00,122 INFO [galaxy.jobs.handler] job handler stop queue stopped
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1543 2020-03-19 13:12:00,123 INFO [test_driver] Application galaxy stopped.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1544 Testing complete. HTML report is in "/Users/jj/gx/gh/jj/galaxytools/optitype/tool_test_output.html".
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1545 There were problems with 2 test(s) - out of 2 test(s) executed. See /Users/jj/gx/gh/jj/galaxytools/optitype/tool_test_output.html for detailed breakdown.
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1546 optitype[0]: failed
bf36e0afdfb4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/optitype commit 703114ab7ad18b1b0e824b103f1df213448c6e97-dirty" jjohnson parents: diff changeset	1547 optitype[1]: failed

Mercurial > repos > jjohnson > optitype

annotate nohup.out @ 2:bf36e0afdfb4 draft default tip