Mercurial > repos > jjohnson > package_cap3_3
comparison tool_dependencies.xml @ 0:8b91ecadabb5 draft default tip
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| author | jjohnson |
|---|---|
| date | Fri, 08 Nov 2013 16:00:56 -0500 |
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| -1:000000000000 | 0:8b91ecadabb5 |
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| 1 <tool_dependency> | |
| 2 <package name="cap3" version="3"> | |
| 3 <install version="1.0"> | |
| 4 <actions_group> | |
| 5 <!-- Download the binaries for CAP3 compatible with 64-bit OSX. --> | |
| 6 <actions os="darwin" architecture="x86_64"> | |
| 7 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel64.tar</action> | |
| 8 <action type="move_file"> | |
| 9 <source>cap3</source> | |
| 10 <destination>$INSTALL_DIR</destination> | |
| 11 </action> | |
| 12 <action type="move_file"> | |
| 13 <source>formcon</source> | |
| 14 <destination>$INSTALL_DIR</destination> | |
| 15 </action> | |
| 16 </actions> | |
| 17 <!-- Download the binaries for CAP3 compatible with 32-bit OSX. --> | |
| 18 <actions os="darwin" architecture="i386"> | |
| 19 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel32.tar</action> | |
| 20 <action type="move_file"> | |
| 21 <source>cap3</source> | |
| 22 <destination>$INSTALL_DIR</destination> | |
| 23 </action> | |
| 24 <action type="move_file"> | |
| 25 <source>formcon</source> | |
| 26 <destination>$INSTALL_DIR</destination> | |
| 27 </action> | |
| 28 </actions> | |
| 29 <!-- Download the binaries for CAP3 compatible with 64-bit Linux. --> | |
| 30 <actions os="linux" architecture="x86_64"> | |
| 31 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar</action> | |
| 32 <action type="move_file"> | |
| 33 <source>cap3</source> | |
| 34 <destination>$INSTALL_DIR</destination> | |
| 35 </action> | |
| 36 <action type="move_file"> | |
| 37 <source>formcon</source> | |
| 38 <destination>$INSTALL_DIR</destination> | |
| 39 </action> | |
| 40 </actions> | |
| 41 <!-- Download the binaries for CAP3 compatible with 32-bit Linux (i386). --> | |
| 42 <actions os="linux" architecture="i386"> | |
| 43 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.tar</action> | |
| 44 <action type="move_file"> | |
| 45 <source>cap3</source> | |
| 46 <destination>$INSTALL_DIR</destination> | |
| 47 </action> | |
| 48 <action type="move_file"> | |
| 49 <source>formcon</source> | |
| 50 <destination>$INSTALL_DIR</destination> | |
| 51 </action> | |
| 52 </actions> | |
| 53 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
| 54 <actions> | |
| 55 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> | |
| 56 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> | |
| 57 <action type="shell_command">uname</action> | |
| 58 <action type="shell_command">arch</action> | |
| 59 <action type="shell_command">false</action> | |
| 60 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 61 </actions> | |
| 62 <action type="set_environment"> | |
| 63 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 64 </action> | |
| 65 </actions_group> | |
| 66 </install> | |
| 67 <readme> | |
| 68 CAP3: A DNA sequence assembly program. | |
| 69 Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877. | |
| 70 http://seq.cs.iastate.edu/ | |
| 71 | |
| 72 LICENCE: | |
| 73 CAP3 and PCAP are available for use at company under a licensing agreement from Michigan Tech. For information on a licensing agreement, please contact Robin Kolehmainen by email at rakolehm@mtu.edu or by phone at 906-487-2228. Michigan Tech handles licensing agreements on PCAP for Iowa State. | |
| 74 | |
| 75 </readme> | |
| 76 </package> | |
| 77 </tool_dependency> |